Variant report

Variant	rs56179443
Chromosome Location	chr10:44816730-44816731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44811931..44814471-chr10:44815222..44820050,4	MCF-7	breast:
2	chr10:44811973..44813538-chr10:44814661..44817151,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1111259	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239000	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12240817	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12246602	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12412586	0.87[EUR][1000 genomes]
rs12414744	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1370158	0.84[ASN][1000 genomes]
rs1436931	0.84[ASN][1000 genomes]
rs1836982	0.84[ASN][1000 genomes]
rs1898317	0.89[ASN][1000 genomes]
rs2028102	0.84[ASN][1000 genomes]
rs2118162	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2457481	0.89[ASN][1000 genomes]
rs2476351	0.89[ASN][1000 genomes]
rs2505737	1.00[ASN][1000 genomes]
rs2505739	1.00[ASN][1000 genomes]
rs2505740	0.89[ASN][1000 genomes]
rs2505743	0.89[ASN][1000 genomes]
rs266109	0.90[EUR][1000 genomes]
rs61856383	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61856384	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61856385	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790834	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894693	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7915618	0.82[EUR][1000 genomes]
rs977754	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44812800-44817200	Weak transcription	Placenta	Placenta
6	chr10:44816600-44821200	Weak transcription	Fetal Heart	heart

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