Variant report

Variant	rs12412586
Chromosome Location	chr10:44851778-44851779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44847947..44849950-chr10:44851520..44853387,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1111259	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239000	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12240817	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12246602	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12414744	0.80[EUR][1000 genomes]
rs2118162	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs266109	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56179443	0.87[EUR][1000 genomes]
rs61856383	0.80[EUR][1000 genomes]
rs61856384	0.83[EUR][1000 genomes]
rs61856385	0.88[EUR][1000 genomes]
rs72790834	0.97[EUR][1000 genomes]
rs7915618	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44847000-44852000	Enhancers	Pancreas	Pancrea
3	chr10:44848000-44851800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:44848000-44851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:44848200-44852200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:44848200-44853600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:44848200-44858600	Weak transcription	Psoas Muscle	Psoas
8	chr10:44848200-44864600	Weak transcription	Fetal Kidney	kidney
9	chr10:44848200-44865000	Weak transcription	Osteobl	bone
10	chr10:44848400-44851800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44848400-44851800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:44848400-44865000	Weak transcription	Right Atrium	heart
13	chr10:44848400-44867400	Weak transcription	Adipose Nuclei	Adipose
14	chr10:44848400-44867600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:44848600-44853800	Weak transcription	Ovary	ovary
16	chr10:44849000-44851800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:44849400-44869000	Weak transcription	Right Ventricle	heart
18	chr10:44849800-44864800	Weak transcription	Left Ventricle	heart
19	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:44850800-44851800	Weak transcription	Fetal Lung	lung
21	chr10:44851000-44853600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:44851200-44852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:44851400-44852000	Enhancers	Fetal Brain Male	brain
24	chr10:44851400-44854200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:44851600-44852000	Genic enhancers	Fetal Stomach	stomach
26	chr10:44851600-44853000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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