Variant report

Variant	rs7915618
Chromosome Location	chr10:44848120-44848121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44847947..44849950-chr10:44851520..44853387,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1111259	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239000	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12240817	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12246602	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12412586	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1370158	0.84[ASN][1000 genomes]
rs1436931	0.84[ASN][1000 genomes]
rs1836982	0.84[ASN][1000 genomes]
rs1898317	0.89[ASN][1000 genomes]
rs2028102	0.84[ASN][1000 genomes]
rs2118162	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2457481	0.89[ASN][1000 genomes]
rs2476351	0.89[ASN][1000 genomes]
rs2505740	0.89[ASN][1000 genomes]
rs2505743	0.89[ASN][1000 genomes]
rs266109	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56179443	0.82[EUR][1000 genomes]
rs61856385	0.81[EUR][1000 genomes]
rs72790834	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44845800-44848400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44846600-44850800	Enhancers	Fetal Lung	lung
4	chr10:44847000-44852000	Enhancers	Pancreas	Pancrea
5	chr10:44847200-44848400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:44847200-44848400	Enhancers	Right Atrium	heart
7	chr10:44847200-44848600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:44847200-44848800	Enhancers	Lung	lung
9	chr10:44847200-44849000	Enhancers	Fetal Stomach	stomach
10	chr10:44847200-44849400	Enhancers	Right Ventricle	heart
11	chr10:44847400-44848200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:44847400-44848200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:44847400-44848200	Enhancers	Fetal Kidney	kidney
14	chr10:44847400-44848200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:44847400-44848200	Enhancers	Stomach Mucosa	stomach
16	chr10:44847400-44848200	Enhancers	NHLF	lung
17	chr10:44847400-44848400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:44847400-44848400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:44847400-44848400	Enhancers	Adipose Nuclei	Adipose
20	chr10:44847400-44848600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:44847400-44848600	Enhancers	Left Ventricle	heart
22	chr10:44847400-44848600	Enhancers	Ovary	ovary
23	chr10:44847400-44848800	Enhancers	Fetal Muscle Leg	muscle
24	chr10:44847600-44848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:44847600-44848200	Bivalent Enhancer	HepG2	liver
26	chr10:44847600-44848200	Enhancers	NH-A	brain
27	chr10:44847600-44848400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:44847600-44848400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr10:44847600-44848400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:44847800-44848200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr10:44847800-44848200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:44847800-44848200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44847800-44848200	Enhancers	Brain Substantia Nigra	brain
34	chr10:44847800-44848200	Enhancers	Osteobl	bone
35	chr10:44847800-44848800	Enhancers	Placenta	Placenta
36	chr10:44847800-44849200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:44848000-44848200	Enhancers	Psoas Muscle	Psoas
38	chr10:44848000-44848800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:44848000-44848800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr10:44848000-44851800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:44848000-44851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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