Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44838214..44839988-chr10:45358990..45361761,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1111259	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239000	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240817	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246602	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412586	0.97[EUR][1000 genomes]
rs12414744	0.83[EUR][1000 genomes]
rs1370158	0.95[ASN][1000 genomes]
rs1436931	0.95[ASN][1000 genomes]
rs1836982	0.95[ASN][1000 genomes]
rs1898317	1.00[ASN][1000 genomes]
rs1898318	0.85[ASN][1000 genomes]
rs2028102	0.95[ASN][1000 genomes]
rs2118162	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457481	1.00[ASN][1000 genomes]
rs2476351	1.00[ASN][1000 genomes]
rs2505737	0.89[ASN][1000 genomes]
rs2505739	0.89[ASN][1000 genomes]
rs2505740	1.00[ASN][1000 genomes]
rs2505743	1.00[ASN][1000 genomes]
rs266109	0.97[EUR][1000 genomes]
rs56179443	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61856383	0.83[EUR][1000 genomes]
rs61856384	0.86[EUR][1000 genomes]
rs61856385	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894693	0.81[EUR][1000 genomes]
rs7915618	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs977754	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
3	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
4	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
5	chr10:44833200-44839400	Weak transcription	Psoas Muscle	Psoas
6	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:44836800-44839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:44836800-44839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:44837400-44839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
13	chr10:44838800-44839400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
15	chr10:44839000-44839600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44839000-44839800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:44839000-44840000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:44839000-44840000	Enhancers	Cortex derived primary cultured neurospheres	brain

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