Variant report

Variant	rs2505743
Chromosome Location	chr10:44823792-44823793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44821569..44823866-chr10:44836381..44838355,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1111259	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11239000	1.00[ASN][1000 genomes]
rs1144483	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1144484	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12240817	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12246602	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1370158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1436931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17155986	1.00[CHB][hapmap]
rs1836982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1898317	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898318	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1898319	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2028102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2118162	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2457481	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476351	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505735	0.83[EUR][1000 genomes]
rs2505736	0.87[CEU][hapmap]
rs2505737	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505739	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505740	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505744	0.82[AFR][1000 genomes]
rs2862116	1.00[CHB][hapmap]
rs56179443	0.89[ASN][1000 genomes]
rs61856385	0.89[ASN][1000 genomes]
rs72790834	1.00[ASN][1000 genomes]
rs7915618	0.89[ASN][1000 genomes]
rs977754	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44822400-44826000	Weak transcription	Small Intestine	intestine
2	chr10:44823000-44827200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:44823200-44830200	Weak transcription	Pancreas	Pancrea

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