Variant report

Variant	rs1144483
Chromosome Location	chr10:44832154-44832155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1144484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370158	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1436931	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17156117	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1836982	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1898317	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1898318	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1898319	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028102	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2457481	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2476351	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs2505736	0.89[CEU][hapmap]
rs2505737	0.84[EUR][1000 genomes]
rs2505739	0.84[EUR][1000 genomes]
rs2505740	0.94[CEU][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2505743	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2505744	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs977754	0.94[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44829000-44832200	Enhancers	Fetal Muscle Trunk	muscle
2	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44829600-44832200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr10:44830400-44833200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
8	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
11	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
12	chr10:44831000-44835000	Weak transcription	Fetal Thymus	thymus
13	chr10:44831200-44833200	Enhancers	Psoas Muscle	Psoas
14	chr10:44831400-44834000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:44831400-44834800	Weak transcription	Placenta	Placenta
16	chr10:44831400-44835600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:44831400-44847200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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