Variant report

Variant	rs1144484
Chromosome Location	chr10:44829517-44829518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1144483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370158	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1436931	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17156117	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1836982	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1898317	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1898318	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1898319	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028102	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2457481	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2476351	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs2505735	0.87[TSI][hapmap]
rs2505736	0.88[CEU][hapmap]
rs2505737	0.84[EUR][1000 genomes]
rs2505739	0.84[EUR][1000 genomes]
rs2505740	0.83[ASW][hapmap];0.94[CEU][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2505743	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2505744	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs977754	0.94[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44823200-44830200	Weak transcription	Pancreas	Pancrea
2	chr10:44827800-44829800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:44828200-44829600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:44829000-44830200	Enhancers	Psoas Muscle	Psoas
5	chr10:44829000-44830400	Enhancers	Fetal Thymus	thymus
6	chr10:44829000-44831200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44829000-44831400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:44829000-44832200	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44829200-44830000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:44829400-44830600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:44829400-44831200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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