Variant report

Variant	rs12240324
Chromosome Location	chr10:44669337-44669338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44668887..44669501-chr10:44754335..44754835,2	MCF-7	breast:
2	chr10:44668657..44669664-chr10:44740101..44741067,9	MCF-7	breast:
3	chr10:44668887..44669565-chr10:44754335..44755174,4	MCF-7	breast:
4	chr10:44668402..44669721-chr10:44731902..44733039,109	MCF-7	breast:
5	chr10:44668602..44669587-chr10:44739181..44740041,6	MCF-7	breast:
6	chr10:44668756..44669635-chr10:44740165..44740989,3	MCF-7	breast:
7	chr10:44668870..44669840-chr10:44732106..44732623,2	MCF-7	breast:
8	chr10:44349396..44350216-chr10:44669102..44669618,2	MCF-7	breast:
9	chr10:44668402..44669705-chr10:44731998..44733019,55	MCF-7	breast:
10	chr10:44668773..44669619-chr10:44796276..44797169,3	MCF-7	breast:
11	chr10:44185118..44187930-chr10:44667702..44670061,3	MCF-7	breast:
12	chr10:44668727..44669822-chr10:44796486..44797204,4	MCF-7	breast:
13	chr10:44668956..44670995-chr10:44797225..44798985,2	MCF-7	breast:
14	chr10:44668670..44669664-chr10:44740182..44741067,4	MCF-7	breast:
15	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:
16	chr10:44193644..44194206-chr10:44668785..44669607,2	MCF-7	breast:
17	chr10:44668076..44670399-chr10:44731878..44734290,2	MCF-7	breast:
18	chr10:44668515..44669612-chr10:44796448..44797191,3	MCF-7	breast:
19	chr10:44668804..44669627-chr10:44739194..44739818,3	MCF-7	breast:
20	chr10:44668379..44669722-chr10:44731795..44732960,38	MCF-7	breast:
21	chr10:44668773..44669337-chr10:44805974..44806908,2	MCF-7	breast:
22	chr10:44668858..44670394-chr10:44753194..44755475,2	MCF-7	breast:
23	chr10:44664819..44666637-chr10:44666893..44669742,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-4	chr10:44669269-44669366	NONHSAT013025

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508883	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12262428	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12264354	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414810	0.96[ASN][1000 genomes]
rs1680637	0.89[ASN][1000 genomes]
rs1704225	0.89[ASN][1000 genomes]
rs1704227	0.89[ASN][1000 genomes]
rs17155417	0.98[ASN][1000 genomes]
rs17155440	0.97[ASN][1000 genomes]
rs17155445	0.96[ASN][1000 genomes]
rs17155514	0.88[ASN][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs4948613	0.96[ASN][1000 genomes]
rs4948614	0.93[ASN][1000 genomes]
rs4948858	0.94[ASN][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs74138248	0.88[ASN][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
3	chr10:44666400-44669800	Enhancers	Pancreas	Pancrea
4	chr10:44667000-44670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:44667400-44669800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:44667400-44670000	Enhancers	Fetal Heart	heart
7	chr10:44667400-44671400	Weak transcription	Right Ventricle	heart
8	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44667600-44669800	Enhancers	Stomach Mucosa	stomach
10	chr10:44667800-44669600	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:44667800-44669600	Enhancers	Fetal Stomach	stomach
12	chr10:44667800-44669600	Enhancers	HepG2	liver
13	chr10:44667800-44669800	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:44668200-44669400	Enhancers	Small Intestine	intestine
15	chr10:44668200-44669600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:44668200-44669600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:44668200-44669600	Enhancers	Fetal Intestine Small	intestine
18	chr10:44668400-44669400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:44668400-44669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:44668400-44669600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:44668600-44669800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
23	chr10:44668800-44669400	Enhancers	NHDF-Ad	bronchial
24	chr10:44668800-44669600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:44669000-44669600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:44669200-44669400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:44669200-44669400	Enhancers	Fetal Kidney	kidney
28	chr10:44669200-44669400	Enhancers	Fetal Lung	lung
29	chr10:44669200-44669600	Enhancers	Fetal Muscle Leg	muscle
30	chr10:44669200-44670200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:44669200-44671800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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