Variant report

Variant	rs17155514
Chromosome Location	chr10:44681502-44681503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508883	0.89[ASN][1000 genomes]
rs10900006	0.89[AMR][1000 genomes]
rs11238910	0.89[AMR][1000 genomes]
rs11238914	0.89[AMR][1000 genomes]
rs11238917	0.89[AMR][1000 genomes]
rs11238920	0.89[AMR][1000 genomes]
rs11238922	0.89[AMR][1000 genomes]
rs11238926	0.89[AMR][1000 genomes]
rs11238931	0.89[AMR][1000 genomes]
rs11238932	0.89[AMR][1000 genomes]
rs11238949	0.84[EUR][1000 genomes]
rs11238952	0.89[AMR][1000 genomes]
rs11238973	0.85[AMR][1000 genomes]
rs11238974	0.85[AMR][1000 genomes]
rs11238975	0.85[AMR][1000 genomes]
rs11238977	0.82[AMR][1000 genomes]
rs11528515	0.89[AMR][1000 genomes]
rs11528516	0.89[AMR][1000 genomes]
rs11528517	0.89[AMR][1000 genomes]
rs12218899	0.85[AMR][1000 genomes]
rs12221014	0.89[AMR][1000 genomes]
rs12240324	0.88[ASN][1000 genomes]
rs12262428	0.89[ASN][1000 genomes]
rs12264354	0.89[ASN][1000 genomes]
rs12413979	0.89[AMR][1000 genomes]
rs12414524	0.89[AMR][1000 genomes]
rs12414810	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12416023	0.89[AMR][1000 genomes]
rs1469894	0.85[AMR][1000 genomes]
rs1680637	0.99[ASN][1000 genomes]
rs1704225	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1704227	0.99[ASN][1000 genomes]
rs17155417	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17155440	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17155445	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17155599	0.89[AMR][1000 genomes]
rs17155606	0.89[AMR][1000 genomes]
rs17155619	0.89[AMR][1000 genomes]
rs17155848	0.89[AMR][1000 genomes]
rs17155973	0.85[AMR][1000 genomes]
rs17155977	0.85[AMR][1000 genomes]
rs1998500	0.85[AMR][1000 genomes]
rs1998501	0.85[AMR][1000 genomes]
rs2862118	0.89[AMR][1000 genomes]
rs3912307	0.89[AMR][1000 genomes]
rs4948613	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4948614	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4948858	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4948859	0.89[AMR][1000 genomes]
rs4948862	0.89[AMR][1000 genomes]
rs4948867	0.89[AMR][1000 genomes]
rs74138248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
8	chr10:44679800-44681800	Weak transcription	Fetal Stomach	stomach
9	chr10:44680200-44683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:44680400-44681800	Weak transcription	Ovary	ovary
11	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:44680600-44681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44680600-44682400	Weak transcription	Left Ventricle	heart
14	chr10:44681200-44682600	Enhancers	NHDF-Ad	bronchial
15	chr10:44681400-44681600	Enhancers	Adipose Nuclei	Adipose
16	chr10:44681400-44682000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44681400-44682200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44681400-44682800	Enhancers	HepG2	liver

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