Variant report

Variant	rs11238949
Chromosome Location	chr10:44734861-44734862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10900006	0.91[ASN][1000 genomes]
rs11238910	0.83[ASN][1000 genomes]
rs11238917	0.83[ASN][1000 genomes]
rs11238920	0.84[ASN][1000 genomes]
rs11238922	0.82[ASN][1000 genomes]
rs11238926	0.86[ASN][1000 genomes]
rs11238931	0.86[ASN][1000 genomes]
rs11238932	0.86[ASN][1000 genomes]
rs11238952	0.90[ASN][1000 genomes]
rs11238973	0.81[ASN][1000 genomes]
rs11238974	0.81[ASN][1000 genomes]
rs11238975	0.81[ASN][1000 genomes]
rs11238977	0.80[ASN][1000 genomes]
rs11528515	0.87[ASN][1000 genomes]
rs11528516	0.89[ASN][1000 genomes]
rs11528517	0.89[ASN][1000 genomes]
rs12218899	0.89[ASN][1000 genomes]
rs12221014	0.89[ASN][1000 genomes]
rs12413979	0.90[ASN][1000 genomes]
rs12414524	0.86[ASN][1000 genomes]
rs12416023	0.90[ASN][1000 genomes]
rs1469894	0.81[ASN][1000 genomes]
rs17155514	0.84[EUR][1000 genomes]
rs17155599	0.83[ASN][1000 genomes]
rs17155606	0.83[ASN][1000 genomes]
rs17155619	0.86[ASN][1000 genomes]
rs17155848	0.86[ASN][1000 genomes]
rs17155973	0.81[ASN][1000 genomes]
rs17155977	0.81[ASN][1000 genomes]
rs1998500	0.90[ASN][1000 genomes]
rs1998501	0.81[ASN][1000 genomes]
rs2862118	0.86[ASN][1000 genomes]
rs3912307	0.86[ASN][1000 genomes]
rs4948859	0.85[ASN][1000 genomes]
rs4948862	0.89[ASN][1000 genomes]
rs4948867	0.86[ASN][1000 genomes]
rs746298	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44729600-44737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:44734000-44736400	Weak transcription	Pancreas	Pancrea
4	chr10:44734800-44735800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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