Variant report

Variant	rs11238975
Chromosome Location	chr10:44778292-44778293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44776762..44778812-chr10:44792922..44795604,2	MCF-7	breast:
2	chr10:44755730..44758552-chr10:44778195..44780852,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237590	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10900006	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238910	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238914	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238920	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11238922	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238926	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238949	0.81[ASN][1000 genomes]
rs11238952	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11238973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238977	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238979	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238982	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528515	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11528516	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11528517	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12218899	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12220724	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12221014	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12412655	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12413395	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12413979	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12414810	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416023	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1469894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155417	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155440	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155445	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155514	0.85[AMR][1000 genomes]
rs17155599	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17155606	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17155619	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17155848	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746048	0.89[ASN][1000 genomes]
rs1998500	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1998501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2862118	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3912307	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948614	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948859	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948862	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4948867	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286694	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs746298	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752642	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44774000-44780000	Enhancers	Fetal Brain Male	brain
2	chr10:44775200-44779800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44777000-44779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44777200-44782800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44777200-44782800	Weak transcription	Lung	lung
6	chr10:44777400-44780000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44777400-44780000	Weak transcription	Right Ventricle	heart
8	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
9	chr10:44777600-44778400	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:44777600-44779800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:44777600-44779800	Weak transcription	Left Ventricle	heart
12	chr10:44777600-44780200	Weak transcription	NHDF-Ad	bronchial
13	chr10:44778000-44779000	Enhancers	K562	blood
14	chr10:44778000-44779400	Enhancers	Brain Germinal Matrix	brain
15	chr10:44778200-44779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:44778200-44779400	Enhancers	Fetal Brain Female	brain

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