Variant report

Variant	rs752642
Chromosome Location	chr10:44783398-44783399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10900006	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238910	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238914	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238920	0.88[AMR][1000 genomes]
rs11238922	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238926	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238931	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238932	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238952	0.88[AMR][1000 genomes]
rs11238973	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238974	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238975	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238979	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238980	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238981	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238982	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11528515	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528516	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528517	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1159931	0.84[ASN][1000 genomes]
rs12218899	0.85[AMR][1000 genomes]
rs12220724	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12221014	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12412655	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12413395	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413979	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414524	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414810	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416023	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1469894	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17155417	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155440	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155445	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155599	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155606	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155619	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155848	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155973	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17155977	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1998500	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998501	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2209065	0.83[ASN][1000 genomes]
rs2862118	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3912307	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948613	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948614	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948858	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948862	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948867	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4948872	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73286694	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746298	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
4	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
5	chr10:44780400-44787600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:44780600-44784400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44781600-44783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:44782000-44783600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:44782000-44783800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:44782000-44785200	Enhancers	Fetal Stomach	stomach
11	chr10:44782000-44787800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:44782200-44783600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:44782200-44783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:44782600-44783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:44782800-44783600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:44782800-44783600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:44783000-44783800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:44783200-44783400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:44783200-44784400	Weak transcription	Ovary	ovary
21	chr10:44783200-44784600	Weak transcription	Left Ventricle	heart
22	chr10:44783200-44786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:44783200-44786200	Weak transcription	Adipose Nuclei	Adipose
24	chr10:44783200-44787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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