Variant report

Variant	rs1159931
Chromosome Location	chr10:44806042-44806043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44668773..44669337-chr10:44805974..44806908,2	MCF-7	breast:
2	chr10:44804868..44806553-chr10:44814577..44816220,2	MCF-7	breast:
3	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
4	chr10:44796365..44797945-chr10:44804933..44807344,2	MCF-7	breast:
5	chr10:44804505..44808299-chr10:44810084..44813443,4	MCF-7	breast:
6	chr10:44805001..44807062-chr10:44879754..44882098,2	MCF-7	breast:
7	chr10:44799839..44801951-chr10:44804606..44806678,2	MCF-7	breast:
8	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
9	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
10	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:
11	chr10:44804168..44805892-chr10:44806040..44808207,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11238977	0.81[JPT][hapmap]
rs11238979	0.85[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs11238980	0.90[ASN][1000 genomes]
rs11238981	0.90[ASN][1000 genomes]
rs11238982	0.92[ASN][1000 genomes]
rs12220724	0.90[ASN][1000 genomes]
rs12412655	0.84[ASN][1000 genomes]
rs12413395	0.87[ASN][1000 genomes]
rs1469894	0.81[JPT][hapmap]
rs1746052	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs2209065	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2862118	0.80[JPT][hapmap]
rs487465	0.81[JPT][hapmap]
rs4948872	0.86[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs573141	0.81[JPT][hapmap]
rs607363	0.81[JPT][hapmap]
rs620356	0.81[JPT][hapmap]
rs620828	0.81[JPT][hapmap]
rs67379075	0.88[ASN][1000 genomes]
rs694425	0.81[JPT][hapmap]
rs7082209	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs73286694	0.86[ASN][1000 genomes]
rs752642	0.84[ASN][1000 genomes]
rs800329	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs800330	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs800332	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
4	chr10:44802200-44806200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:44802200-44806400	Weak transcription	HSMM	muscle
6	chr10:44802400-44806200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44802400-44806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:44802400-44806200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:44802400-44806200	Weak transcription	Psoas Muscle	Psoas
10	chr10:44802400-44806200	Weak transcription	Right Atrium	heart
11	chr10:44802400-44806200	Weak transcription	NHDF-Ad	bronchial
12	chr10:44802400-44806200	Weak transcription	Osteobl	bone
13	chr10:44802400-44806400	Weak transcription	NHLF	lung
14	chr10:44802400-44806600	Weak transcription	NH-A	brain
15	chr10:44802600-44806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:44802600-44806400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:44803600-44806200	Enhancers	Fetal Stomach	stomach
18	chr10:44804200-44806200	Enhancers	Fetal Brain Female	brain
19	chr10:44804200-44806200	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:44804400-44806200	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:44804600-44806200	Enhancers	Colon Smooth Muscle	Colon
22	chr10:44804600-44807000	Enhancers	Fetal Brain Male	brain
23	chr10:44805200-44806200	Weak transcription	Colonic Mucosa	Colon
24	chr10:44805200-44806200	Weak transcription	Lung	lung
25	chr10:44805600-44806200	Enhancers	Fetal Thymus	thymus
26	chr10:44805600-44807200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:44805800-44806200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr10:44805800-44806200	Enhancers	Brain Germinal Matrix	brain
29	chr10:44805800-44806400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:44805800-44806400	Enhancers	Fetal Lung	lung
31	chr10:44805800-44806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:44805800-44807000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:44806000-44806200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr10:44806000-44806200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:44806000-44806200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
36	chr10:44806000-44806200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:44806000-44806200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:44806000-44806200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:44806000-44806200	Enhancers	Adipose Nuclei	Adipose
40	chr10:44806000-44806200	Enhancers	Brain Anterior Caudate	brain
41	chr10:44806000-44806200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr10:44806000-44806200	Bivalent Enhancer	Fetal Intestine Small	intestine
43	chr10:44806000-44806200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr10:44806000-44806200	Enhancers	Fetal Muscle Leg	muscle
45	chr10:44806000-44806200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:44806000-44806200	Enhancers	Right Ventricle	heart
47	chr10:44806000-44806200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:44806000-44806200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:44806000-44806400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:44806000-44806600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood

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