Variant report

Variant	rs11238982
Chromosome Location	chr10:44806727-44806728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44806565..44809195-chr10:45358624..45361285,2	MCF-7	breast:
2	chr10:44668773..44669337-chr10:44805974..44806908,2	MCF-7	breast:
3	chr10:44796365..44797945-chr10:44804933..44807344,2	MCF-7	breast:
4	chr10:44804505..44808299-chr10:44810084..44813443,4	MCF-7	breast:
5	chr10:44805001..44807062-chr10:44879754..44882098,2	MCF-7	breast:
6	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
7	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
8	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:
9	chr10:44166819..44167763-chr10:44806148..44807076,3	K562	blood:
10	chr10:44796684..44797219-chr10:44806257..44806909,2	K562	blood:
11	chr10:44804168..44805892-chr10:44806040..44808207,2	MCF-7	breast:
12	chr10:44166763..44167802-chr10:44806081..44806918,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10900006	1.00[EUR][1000 genomes]
rs11238910	1.00[EUR][1000 genomes]
rs11238914	1.00[EUR][1000 genomes]
rs11238917	1.00[EUR][1000 genomes]
rs11238922	1.00[EUR][1000 genomes]
rs11238926	1.00[EUR][1000 genomes]
rs11238931	1.00[EUR][1000 genomes]
rs11238932	1.00[EUR][1000 genomes]
rs11238973	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238974	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238975	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238977	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238979	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238980	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238981	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11528515	1.00[EUR][1000 genomes]
rs11528516	1.00[EUR][1000 genomes]
rs11528517	1.00[EUR][1000 genomes]
rs1159931	0.92[ASN][1000 genomes]
rs12220724	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221014	1.00[EUR][1000 genomes]
rs12412655	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12413395	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12413979	1.00[EUR][1000 genomes]
rs12414524	1.00[EUR][1000 genomes]
rs12414810	1.00[EUR][1000 genomes]
rs12416023	1.00[EUR][1000 genomes]
rs1469894	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155417	1.00[EUR][1000 genomes]
rs17155440	1.00[EUR][1000 genomes]
rs17155445	1.00[EUR][1000 genomes]
rs17155599	1.00[EUR][1000 genomes]
rs17155606	1.00[EUR][1000 genomes]
rs17155619	1.00[EUR][1000 genomes]
rs17155848	1.00[EUR][1000 genomes]
rs17155973	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155977	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998500	1.00[EUR][1000 genomes]
rs1998501	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209065	0.91[ASN][1000 genomes]
rs2862118	1.00[EUR][1000 genomes]
rs3912307	1.00[EUR][1000 genomes]
rs4948613	1.00[EUR][1000 genomes]
rs4948614	1.00[EUR][1000 genomes]
rs4948858	1.00[EUR][1000 genomes]
rs4948859	1.00[EUR][1000 genomes]
rs4948862	1.00[EUR][1000 genomes]
rs4948867	1.00[EUR][1000 genomes]
rs4948872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67379075	0.81[ASN][1000 genomes]
rs73286694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs746298	1.00[EUR][1000 genomes]
rs752642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44804600-44807000	Enhancers	Fetal Brain Male	brain
2	chr10:44805600-44807200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:44805800-44807000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:44806000-44806800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44806000-44807000	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:44806000-44807000	Flanking Active TSS	GM12878-XiMat	blood
7	chr10:44806000-44807200	Enhancers	Placenta	Placenta
8	chr10:44806000-44807400	Enhancers	Fetal Heart	heart
9	chr10:44806200-44806800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:44806200-44806800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:44806200-44806800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:44806200-44806800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:44806200-44806800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr10:44806200-44806800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:44806200-44806800	Active TSS	Brain Cingulate Gyrus	brain
16	chr10:44806200-44806800	Active TSS	Brain Hippocampus Middle	brain
17	chr10:44806200-44806800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:44806200-44806800	Active TSS	Brain Substantia Nigra	brain
19	chr10:44806200-44806800	Enhancers	Left Ventricle	heart
20	chr10:44806200-44806800	Flanking Active TSS	Pancreas	Pancrea
21	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr10:44806200-44807000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr10:44806200-44807000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:44806200-44807000	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr10:44806200-44807000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr10:44806200-44807000	Enhancers	Esophagus	oesophagus
29	chr10:44806200-44807000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr10:44806200-44807000	Bivalent Enhancer	Fetal Thymus	thymus
31	chr10:44806200-44807000	Enhancers	Gastric	stomach
32	chr10:44806200-44807000	Flanking Active TSS	Right Ventricle	heart
33	chr10:44806200-44807000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr10:44806200-44807000	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr10:44806200-44807200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr10:44806200-44807200	Enhancers	Primary hematopoietic stem cells	blood
37	chr10:44806200-44807200	Enhancers	Lung	lung
38	chr10:44806200-44807200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr10:44806200-44807200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr10:44806200-44807200	Enhancers	NHDF-Ad	bronchial
41	chr10:44806400-44806800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr10:44806400-44806800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:44806400-44806800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:44806400-44806800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:44806400-44806800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:44806400-44806800	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr10:44806400-44806800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr10:44806400-44806800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:44806400-44806800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:44806400-44806800	Active TSS	Colon Smooth Muscle	Colon

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