Variant report

Variant	rs12412655
Chromosome Location	chr10:44787347-44787348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10900006	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238910	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238914	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238920	0.85[AMR][1000 genomes]
rs11238922	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238926	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238931	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238932	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238952	0.85[AMR][1000 genomes]
rs11238973	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11238974	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11238975	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11238977	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238979	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238982	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11528515	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528516	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528517	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1159931	0.82[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12218899	0.81[AMR][1000 genomes]
rs12220724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12221014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12413395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413979	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414524	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12414810	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416023	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1469894	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17155417	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155440	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155445	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155599	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155606	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155619	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155848	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17155973	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17155977	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1746052	0.89[CHD][hapmap]
rs1998500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998501	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2209065	0.80[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2862118	0.92[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3912307	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948613	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948614	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948858	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948859	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948867	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948872	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs607363	0.82[CHD][hapmap]
rs73286694	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746298	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs752642	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
4	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
5	chr10:44780400-44787600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:44782000-44787800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:44783200-44787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:44783600-44787800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:44783800-44787400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:44783800-44787800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:44784800-44787600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
15	chr10:44785000-44787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:44785600-44788600	Weak transcription	Osteobl	bone
18	chr10:44786400-44787800	Enhancers	Fetal Stomach	stomach
19	chr10:44786600-44788200	Enhancers	Fetal Kidney	kidney
20	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:44786800-44787800	Weak transcription	Ovary	ovary
22	chr10:44787000-44788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44787000-44788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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