Variant report

Variant	rs11238977
Chromosome Location	chr10:44780361-44780362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44755730..44758552-chr10:44778195..44780852,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237590	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10900006	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238910	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238914	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238920	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11238922	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238926	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238931	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238932	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238949	0.80[ASN][1000 genomes]
rs11238952	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11238973	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238974	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238975	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238979	0.84[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238980	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238981	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528515	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11528516	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11528517	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1159931	0.81[JPT][hapmap]
rs12218899	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12220724	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12221014	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12412655	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12413395	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413979	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12414524	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12414810	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469894	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155445	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155514	0.82[AMR][1000 genomes]
rs17155599	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17155606	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17155619	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17155848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155973	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155977	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1746048	0.89[ASN][1000 genomes]
rs1746052	0.86[CHD][hapmap]
rs1998500	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1998501	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209065	0.81[JPT][hapmap]
rs2862118	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3912307	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948613	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948614	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948858	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948859	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948862	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948867	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948872	0.85[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs746298	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752642	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777200-44782800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:44777200-44782800	Weak transcription	Lung	lung
3	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
4	chr10:44779400-44781800	Weak transcription	Fetal Brain Female	brain
5	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:44779800-44780400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44779800-44780400	Enhancers	Left Ventricle	heart
9	chr10:44779800-44780400	Bivalent Enhancer	HepG2	liver
10	chr10:44779800-44780800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:44780000-44780400	Enhancers	Right Ventricle	heart
12	chr10:44780000-44780600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44780000-44783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
15	chr10:44780200-44780400	Enhancers	Fetal Muscle Leg	muscle
16	chr10:44780200-44780400	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:44780200-44780400	Enhancers	NHDF-Ad	bronchial

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