Variant report

Variant	rs746298
Chromosome Location	chr10:44756039-44756040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:
2	chr10:44749530..44752176-chr10:44753699..44756216,2	MCF-7	breast:
3	chr10:44753557..44756544-chr10:44758616..44760217,2	MCF-7	breast:
4	chr10:44755013..44756692-chr10:44790155..44792136,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10900006	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238910	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11238914	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11238920	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11238922	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11238926	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238931	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238932	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238949	0.86[ASN][1000 genomes]
rs11238952	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11238973	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238974	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238975	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238977	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238979	1.00[EUR][1000 genomes]
rs11238980	1.00[EUR][1000 genomes]
rs11238981	1.00[EUR][1000 genomes]
rs11238982	1.00[EUR][1000 genomes]
rs11528515	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11528516	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11528517	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12218899	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12220724	1.00[EUR][1000 genomes]
rs12221014	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12412655	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12413395	1.00[EUR][1000 genomes]
rs12413979	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12414524	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414810	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416023	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1469894	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155440	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155445	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155599	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155606	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155848	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155973	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155977	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1746048	0.84[ASN][1000 genomes]
rs1998500	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2862118	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3912307	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948613	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948614	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948858	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948859	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948862	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4948867	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948872	1.00[EUR][1000 genomes]
rs73286694	1.00[EUR][1000 genomes]
rs752642	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44749400-44756200	Weak transcription	Lung	lung
3	chr10:44749600-44756400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:44749800-44756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44753000-44757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44754200-44756600	Enhancers	GM12878-XiMat	blood
7	chr10:44754600-44758400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:44754800-44756400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:44755200-44756200	Weak transcription	Placenta	Placenta
10	chr10:44755200-44756600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:44755200-44756600	Weak transcription	Esophagus	oesophagus
12	chr10:44755200-44757000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:44755200-44757800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:44755400-44757000	Weak transcription	Fetal Intestine Small	intestine
15	chr10:44755400-44757000	Weak transcription	Pancreas	Pancrea
16	chr10:44755400-44758200	Enhancers	Fetal Heart	heart
17	chr10:44755800-44757800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:44755800-44758400	Enhancers	Right Ventricle	heart
19	chr10:44756000-44757400	Bivalent Enhancer	Fetal Stomach	stomach
20	chr10:44756000-44758400	Enhancers	Spleen	Spleen
21	chr10:44756000-44759200	Enhancers	NHDF-Ad	bronchial
22	chr10:44756000-44761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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