Variant report

Variant	rs17155440
Chromosome Location	chr10:44675512-44675513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10508883	0.97[ASN][1000 genomes]
rs10900006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238974	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238975	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238977	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238979	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238980	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238981	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238982	1.00[EUR][1000 genomes]
rs11528515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11528517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12218899	0.96[AMR][1000 genomes]
rs12220724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12221014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240324	0.97[ASN][1000 genomes]
rs12262428	0.97[ASN][1000 genomes]
rs12264354	0.98[ASN][1000 genomes]
rs12412655	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12413395	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12413979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1469894	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1680637	0.92[ASN][1000 genomes]
rs1704225	0.92[ASN][1000 genomes]
rs1704227	0.92[ASN][1000 genomes]
rs17155417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17155445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155514	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17155599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998500	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998501	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2862118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3912307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4948872	1.00[EUR][1000 genomes]
rs73286694	1.00[EUR][1000 genomes]
rs74138248	0.91[ASN][1000 genomes]
rs746298	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs752642	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
3	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
5	chr10:44672000-44675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:44674600-44677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44674800-44676400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:44674800-44676400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:44675000-44676000	Enhancers	NHLF	lung
10	chr10:44675000-44676200	Enhancers	HSMM	muscle
11	chr10:44675200-44676600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44675200-44677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:44675200-44677200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:44675400-44675600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:44675400-44675800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:44675400-44675800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:44675400-44675800	Flanking Active TSS	HSMMtube	muscle
18	chr10:44675400-44676000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr10:44675400-44676000	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:44675400-44676000	Enhancers	HepG2	liver
21	chr10:44675400-44676000	Enhancers	Osteobl	bone
22	chr10:44675400-44676200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:44675400-44676200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44675400-44676200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:44675400-44676200	Enhancers	Fetal Muscle Leg	muscle
26	chr10:44675400-44676400	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:44675400-44676600	Enhancers	NH-A	brain
28	chr10:44675400-44676800	Enhancers	Colon Smooth Muscle	Colon
29	chr10:44675400-44677000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links