Variant report

Variant	rs67379075
Chromosome Location	chr10:44811968-44811969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11238982	0.81[ASN][1000 genomes]
rs11238983	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1159931	0.88[ASN][1000 genomes]
rs11814779	0.81[ASN][1000 genomes]
rs12265086	0.94[EUR][1000 genomes]
rs12265306	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2146807	0.92[EUR][1000 genomes]
rs2209065	0.87[ASN][1000 genomes]
rs3740084	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4491167	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4948872	0.81[ASN][1000 genomes]
rs61856381	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7082209	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs800332	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44811400-44812200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:44811400-44812400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:44811400-44812400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44811600-44812400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:44811600-44812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:44811600-44812600	Active TSS	K562	blood
11	chr10:44811800-44812400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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