Variant report

Variant	rs11814779
Chromosome Location	chr10:44806505-44806506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44668773..44669337-chr10:44805974..44806908,2	MCF-7	breast:
2	chr10:44804868..44806553-chr10:44814577..44816220,2	MCF-7	breast:
3	chr10:44796365..44797945-chr10:44804933..44807344,2	MCF-7	breast:
4	chr10:44804505..44808299-chr10:44810084..44813443,4	MCF-7	breast:
5	chr10:44805001..44807062-chr10:44879754..44882098,2	MCF-7	breast:
6	chr10:44799839..44801951-chr10:44804606..44806678,2	MCF-7	breast:
7	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
8	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
9	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:
10	chr10:44166819..44167763-chr10:44806148..44807076,3	K562	blood:
11	chr10:44796684..44797219-chr10:44806257..44806909,2	K562	blood:
12	chr10:44804168..44805892-chr10:44806040..44808207,2	MCF-7	breast:
13	chr10:44166763..44167802-chr10:44806081..44806918,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs67379075	0.81[ASN][1000 genomes]
rs7082209	0.96[ASN][1000 genomes]
rs800330	0.87[ASN][1000 genomes]
rs800332	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44802400-44806600	Weak transcription	NH-A	brain
2	chr10:44804600-44807000	Enhancers	Fetal Brain Male	brain
3	chr10:44805600-44807200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:44805800-44806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:44805800-44807000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:44806000-44806600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
7	chr10:44806000-44806800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44806000-44807000	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:44806000-44807000	Flanking Active TSS	GM12878-XiMat	blood
10	chr10:44806000-44807200	Enhancers	Placenta	Placenta
11	chr10:44806000-44807400	Enhancers	Fetal Heart	heart
12	chr10:44806200-44806600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:44806200-44806600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:44806200-44806600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:44806200-44806600	Flanking Active TSS	Colonic Mucosa	Colon
16	chr10:44806200-44806600	Active TSS	Fetal Brain Female	brain
17	chr10:44806200-44806600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
18	chr10:44806200-44806600	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr10:44806200-44806600	Flanking Active TSS	Fetal Stomach	stomach
20	chr10:44806200-44806600	Active TSS	Placenta Amnion	Placenta Amnion
21	chr10:44806200-44806600	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr10:44806200-44806600	Enhancers	Right Atrium	heart
23	chr10:44806200-44806600	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr10:44806200-44806800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:44806200-44806800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
26	chr10:44806200-44806800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:44806200-44806800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:44806200-44806800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:44806200-44806800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:44806200-44806800	Active TSS	Brain Cingulate Gyrus	brain
31	chr10:44806200-44806800	Active TSS	Brain Hippocampus Middle	brain
32	chr10:44806200-44806800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44806200-44806800	Active TSS	Brain Substantia Nigra	brain
34	chr10:44806200-44806800	Enhancers	Left Ventricle	heart
35	chr10:44806200-44806800	Flanking Active TSS	Pancreas	Pancrea
36	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
37	chr10:44806200-44807000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr10:44806200-44807000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:44806200-44807000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:44806200-44807000	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr10:44806200-44807000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr10:44806200-44807000	Enhancers	Esophagus	oesophagus
44	chr10:44806200-44807000	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr10:44806200-44807000	Bivalent Enhancer	Fetal Thymus	thymus
46	chr10:44806200-44807000	Enhancers	Gastric	stomach
47	chr10:44806200-44807000	Flanking Active TSS	Right Ventricle	heart
48	chr10:44806200-44807000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr10:44806200-44807000	Bivalent Enhancer	Stomach Mucosa	stomach
50	chr10:44806200-44807200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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