Variant report

Variant	rs2146807
Chromosome Location	chr10:44813738-44813739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1111259	0.82[MEX][hapmap]
rs11238983	1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12265086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12265306	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12414744	0.86[AMR][1000 genomes]
rs2505735	0.83[MEX][hapmap]
rs3740084	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491167	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs479596	1.00[JPT][hapmap]
rs61856381	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61856383	0.86[AMR][1000 genomes]
rs61856384	0.86[AMR][1000 genomes]
rs67379075	0.92[EUR][1000 genomes]
rs7082209	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs7913265	0.86[AMR][1000 genomes]
rs7914042	0.86[AMR][1000 genomes]
rs977754	0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2146807	ZNF22	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44812800-44814200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:44812800-44817200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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