Variant report

Variant	rs1318409
Chromosome Location	chr10:44838722-44838723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17155988	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17156166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1889401	1.00[JPT][hapmap]
rs2760669	1.00[JPT][hapmap]
rs4948874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288735	1.00[EUR][1000 genomes]
rs73288739	1.00[EUR][1000 genomes]
rs73288742	1.00[EUR][1000 genomes]
rs73288752	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288778	1.00[EUR][1000 genomes]
rs73288782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288790	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288791	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
3	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
4	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
5	chr10:44833200-44839400	Weak transcription	Psoas Muscle	Psoas
6	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:44836800-44839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:44836800-44839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:44837400-44839000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:44837400-44839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:44838600-44838800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:44838600-44838800	Enhancers	Fetal Thymus	thymus
15	chr10:44838600-44839000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44838600-44867400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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