Variant report

Variant	rs73288739
Chromosome Location	chr10:44818299-44818300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1318409	1.00[EUR][1000 genomes]
rs1657344	0.83[ASN][1000 genomes]
rs17155988	0.83[ASN][1000 genomes]
rs17156166	0.91[EUR][1000 genomes]
rs4948874	0.91[EUR][1000 genomes]
rs4948875	1.00[EUR][1000 genomes]
rs731336	1.00[EUR][1000 genomes]
rs73288735	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288742	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73288752	1.00[EUR][1000 genomes]
rs73288778	1.00[EUR][1000 genomes]
rs73288782	1.00[EUR][1000 genomes]
rs73288787	1.00[EUR][1000 genomes]
rs73288790	0.91[EUR][1000 genomes]
rs73288791	0.91[EUR][1000 genomes]
rs7897798	1.00[EUR][1000 genomes]
rs800315	0.83[ASN][1000 genomes]
rs800329	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44816600-44821200	Weak transcription	Fetal Heart	heart
6	chr10:44817400-44820000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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