Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44838214..44839988-chr10:45358990..45361761,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1318409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155988	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17156166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288735	1.00[EUR][1000 genomes]
rs73288739	1.00[EUR][1000 genomes]
rs73288742	1.00[EUR][1000 genomes]
rs73288752	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288778	1.00[EUR][1000 genomes]
rs73288782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288790	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288791	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
2	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
3	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
4	chr10:44833200-44839400	Weak transcription	Psoas Muscle	Psoas
5	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:44836800-44839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:44836800-44839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:44837400-44839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
12	chr10:44838800-44839400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
14	chr10:44839000-44839600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:44839000-44839800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:44839000-44840000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:44839000-44840000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:44839200-44839600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:44839200-44839600	Enhancers	Brain Anterior Caudate	brain
20	chr10:44839200-44840000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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