Variant report

Variant	rs7897798
Chromosome Location	chr10:44821230-44821231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1318409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155988	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17156166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1889401	1.00[JPT][hapmap]
rs2760669	1.00[JPT][hapmap]
rs4948874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288735	1.00[EUR][1000 genomes]
rs73288739	1.00[EUR][1000 genomes]
rs73288742	1.00[EUR][1000 genomes]
rs73288752	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288778	1.00[EUR][1000 genomes]
rs73288782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288787	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288790	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288791	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
2	chr10:44819400-44822400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:44820000-44821400	Enhancers	Fetal Intestine Large	intestine
4	chr10:44820000-44822200	Enhancers	HepG2	liver
5	chr10:44820000-44822400	Enhancers	Stomach Mucosa	stomach
6	chr10:44820000-44823000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:44820000-44823200	Enhancers	Pancreas	Pancrea
8	chr10:44820200-44821400	Weak transcription	Right Ventricle	heart
9	chr10:44820200-44821800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:44820400-44821800	Weak transcription	Fetal Thymus	thymus
11	chr10:44820600-44822400	Enhancers	Fetal Muscle Leg	muscle
12	chr10:44820600-44822400	Enhancers	Psoas Muscle	Psoas
13	chr10:44820800-44822400	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:44820800-44822400	Enhancers	Right Atrium	heart
15	chr10:44820800-44822400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:44821000-44822400	Enhancers	Colon Smooth Muscle	Colon
17	chr10:44821200-44822000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:44821200-44822200	Weak transcription	Small Intestine	intestine
19	chr10:44821200-44822800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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