Variant report

Variant	rs73288787
Chromosome Location	chr10:44845692-44845693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1318409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156166	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288735	1.00[EUR][1000 genomes]
rs73288739	1.00[EUR][1000 genomes]
rs73288742	1.00[EUR][1000 genomes]
rs73288752	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288778	1.00[EUR][1000 genomes]
rs73288782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288790	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73288791	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
2	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
6	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
7	chr10:44839600-44848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44843800-44847200	Weak transcription	Fetal Stomach	stomach
9	chr10:44843800-44847400	Weak transcription	Ovary	ovary
10	chr10:44844400-44847400	Weak transcription	Adipose Nuclei	Adipose
11	chr10:44845200-44845800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
12	chr10:44845200-44846600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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