Variant report

Variant	rs17155988
Chromosome Location	chr10:44792054-44792055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44790196..44793217-chr10:44793221..44795884,3	MCF-7	breast:
2	chr10:44790586..44792742-chr10:44798450..44801246,2	K562	blood:
3	chr10:44755013..44756692-chr10:44790155..44792136,2	MCF-7	breast:
4	chr10:44790481..44792534-chr10:44792786..44795587,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11238983	1.00[JPT][hapmap]
rs1318409	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1657344	1.00[ASN][1000 genomes]
rs1657346	0.91[ASN][1000 genomes]
rs17156166	1.00[CHB][hapmap]
rs4491167	1.00[JPT][hapmap]
rs4948874	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs731336	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73286667	1.00[EUR][1000 genomes]
rs73288735	0.83[ASN][1000 genomes]
rs73288739	0.83[ASN][1000 genomes]
rs7897798	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs800315	1.00[ASN][1000 genomes]
rs800329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3352463	chr10:44789446-44792444	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44789200-44796600	Weak transcription	Fetal Brain Female	brain
2	chr10:44790600-44792200	Enhancers	Brain Angular Gyrus	brain
3	chr10:44790600-44796600	Weak transcription	Aorta	Aorta
4	chr10:44791000-44793200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:44791000-44795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44791200-44793000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:44791200-44793200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:44791200-44793200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:44791200-44794400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:44791200-44795200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:44791200-44795400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:44791200-44796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:44791200-44796000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:44791200-44796600	Weak transcription	Left Ventricle	heart
15	chr10:44791200-44796800	Weak transcription	Gastric	stomach
16	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:44791400-44792800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:44791400-44794600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:44791400-44795600	Weak transcription	NHLF	lung
20	chr10:44791400-44795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:44791400-44796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:44791400-44796000	Weak transcription	GM12878-XiMat	blood
23	chr10:44791400-44796200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:44791400-44796200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:44791400-44796200	Weak transcription	Brain Substantia Nigra	brain
26	chr10:44791400-44796400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:44791600-44792400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:44791600-44793800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:44791600-44794200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:44791600-44795200	Weak transcription	Brain Germinal Matrix	brain
31	chr10:44791600-44795400	Weak transcription	NHDF-Ad	bronchial
32	chr10:44791600-44795600	Weak transcription	Osteobl	bone
33	chr10:44791600-44796000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:44791600-44796000	Weak transcription	NH-A	brain
35	chr10:44791600-44796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:44791600-44796200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:44791600-44796800	Weak transcription	Right Ventricle	heart
38	chr10:44791800-44792200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:44792000-44792600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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