Variant report

Variant	rs1657346
Chromosome Location	chr10:44777560-44777561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44776762..44778812-chr10:44792922..44795604,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11238889	0.81[EUR][1000 genomes]
rs11238890	0.81[EUR][1000 genomes]
rs11238891	0.81[EUR][1000 genomes]
rs11238892	0.81[EUR][1000 genomes]
rs11238894	0.81[EUR][1000 genomes]
rs11238923	0.82[EUR][1000 genomes]
rs11238925	0.82[EUR][1000 genomes]
rs11238927	0.82[EUR][1000 genomes]
rs11238929	0.83[EUR][1000 genomes]
rs11238943	0.83[EUR][1000 genomes]
rs11238944	0.83[EUR][1000 genomes]
rs11238946	0.83[EUR][1000 genomes]
rs11238947	0.82[EUR][1000 genomes]
rs11238983	1.00[JPT][hapmap]
rs11492882	0.83[EUR][1000 genomes]
rs11511571	0.83[EUR][1000 genomes]
rs11511599	0.83[EUR][1000 genomes]
rs11517223	0.83[EUR][1000 genomes]
rs11517251	0.83[EUR][1000 genomes]
rs11592445	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs12355852	0.82[EUR][1000 genomes]
rs1619661	0.86[EUR][1000 genomes]
rs1657344	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1657345	0.97[AFR][1000 genomes]
rs1657349	0.82[EUR][1000 genomes]
rs1680639	0.82[EUR][1000 genomes]
rs1704217	0.86[EUR][1000 genomes]
rs1704218	0.86[EUR][1000 genomes]
rs1704221	0.82[EUR][1000 genomes]
rs1704222	0.83[EUR][1000 genomes]
rs17155988	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1746042	0.86[EUR][1000 genomes]
rs1746044	0.88[EUR][1000 genomes]
rs1746052	0.92[CEU][hapmap]
rs2781545	0.82[EUR][1000 genomes]
rs2804031	0.82[EUR][1000 genomes]
rs4491167	1.00[JPT][hapmap]
rs471451	0.83[EUR][1000 genomes]
rs479596	0.86[CEU][hapmap]
rs487465	0.86[CEU][hapmap]
rs523297	0.95[EUR][1000 genomes]
rs545025	0.89[EUR][1000 genomes]
rs556434	0.86[EUR][1000 genomes]
rs573141	0.86[CEU][hapmap]
rs58129751	0.83[EUR][1000 genomes]
rs58540467	0.80[EUR][1000 genomes]
rs589655	0.91[EUR][1000 genomes]
rs596152	0.86[EUR][1000 genomes]
rs606314	0.91[EUR][1000 genomes]
rs607363	0.92[CEU][hapmap]
rs617019	0.89[EUR][1000 genomes]
rs620356	0.86[CEU][hapmap]
rs620828	0.86[CEU][hapmap]
rs622725	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs629213	0.89[EUR][1000 genomes]
rs634963	0.85[CEU][hapmap]
rs661697	0.89[EUR][1000 genomes]
rs673354	0.86[EUR][1000 genomes]
rs673778	0.84[EUR][1000 genomes]
rs674746	0.86[EUR][1000 genomes]
rs676966	0.89[EUR][1000 genomes]
rs677465	0.86[EUR][1000 genomes]
rs680091	0.89[EUR][1000 genomes]
rs694425	0.86[CEU][hapmap]
rs7079375	0.86[EUR][1000 genomes]
rs7097076	0.82[EUR][1000 genomes]
rs800315	0.91[ASN][1000 genomes]
rs800329	0.91[ASN][1000 genomes]
rs906944	0.80[EUR][1000 genomes]
rs920172	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44774000-44780000	Enhancers	Fetal Brain Male	brain
2	chr10:44775200-44779800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44775800-44777600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44776600-44777600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:44776600-44777600	Enhancers	Left Ventricle	heart
6	chr10:44776600-44777600	Enhancers	NHDF-Ad	bronchial
7	chr10:44777000-44778000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:44777000-44778200	Weak transcription	Fetal Brain Female	brain
9	chr10:44777000-44779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44777200-44782800	Weak transcription	Adipose Nuclei	Adipose
11	chr10:44777200-44782800	Weak transcription	Lung	lung
12	chr10:44777400-44780000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44777400-44780000	Weak transcription	Right Ventricle	heart
14	chr10:44777400-44788200	Weak transcription	Right Atrium	heart

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