Variant report

Variant	rs58129751
Chromosome Location	chr10:44706720-44706721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10160170	0.82[EUR][1000 genomes]
rs10900000	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10900001	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10900002	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10900003	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238889	0.94[EUR][1000 genomes]
rs11238890	0.94[EUR][1000 genomes]
rs11238891	0.94[EUR][1000 genomes]
rs11238892	0.94[EUR][1000 genomes]
rs11238894	0.94[EUR][1000 genomes]
rs11238898	0.95[EUR][1000 genomes]
rs11238901	0.95[EUR][1000 genomes]
rs11238902	0.95[EUR][1000 genomes]
rs11238911	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238912	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238915	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238916	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238923	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238925	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238927	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238929	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238943	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238944	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238946	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238947	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11492882	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11511571	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11511599	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11517223	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11517251	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11591406	0.95[EUR][1000 genomes]
rs11592445	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11594667	0.95[EUR][1000 genomes]
rs11595159	0.95[EUR][1000 genomes]
rs11595946	0.95[EUR][1000 genomes]
rs12355852	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1615053	0.95[EUR][1000 genomes]
rs1619661	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657346	0.83[EUR][1000 genomes]
rs1657349	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1680636	0.95[EUR][1000 genomes]
rs1680639	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1704217	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1704218	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1704221	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1704222	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1704223	0.95[EUR][1000 genomes]
rs1704226	0.95[EUR][1000 genomes]
rs1704228	0.95[EUR][1000 genomes]
rs1704231	0.81[ASN][1000 genomes]
rs1746042	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1746044	0.95[EUR][1000 genomes]
rs2664856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2781545	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2804031	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs523297	0.88[EUR][1000 genomes]
rs545025	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs556434	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs583489	0.80[EUR][1000 genomes]
rs58540467	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs589655	0.92[EUR][1000 genomes]
rs596152	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs606314	0.92[EUR][1000 genomes]
rs617019	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61855739	0.95[EUR][1000 genomes]
rs61855740	0.95[EUR][1000 genomes]
rs61855743	0.95[EUR][1000 genomes]
rs61857460	0.95[EUR][1000 genomes]
rs622725	0.83[EUR][1000 genomes]
rs629213	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs661697	0.94[EUR][1000 genomes]
rs673354	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs673778	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs674746	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs676966	0.94[EUR][1000 genomes]
rs677465	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs680091	0.94[EUR][1000 genomes]
rs7079375	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082177	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7086639	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100370	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7900072	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902040	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs906944	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44705600-44706800	Weak transcription	Ovary	ovary
2	chr10:44705800-44707200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:44705800-44707400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:44706200-44710400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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