Variant report

Variant	rs7079375
Chromosome Location	chr10:44730310-44730311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
2	chr10:44729297..44731322-chr10:44735217..44738184,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10900000	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900001	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900002	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900003	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs11238890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11238891	0.91[EUR][1000 genomes]
rs11238892	0.91[EUR][1000 genomes]
rs11238894	0.91[EUR][1000 genomes]
rs11238898	0.92[EUR][1000 genomes]
rs11238901	0.92[EUR][1000 genomes]
rs11238902	0.92[EUR][1000 genomes]
rs11238911	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238912	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238916	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238923	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238925	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238927	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238929	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238943	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238944	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238946	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238947	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11492882	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511571	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511599	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517223	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11517251	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591406	0.92[EUR][1000 genomes]
rs11592445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594667	0.92[EUR][1000 genomes]
rs11595159	0.92[EUR][1000 genomes]
rs11595946	0.92[EUR][1000 genomes]
rs12355852	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615053	0.92[EUR][1000 genomes]
rs1619661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657346	0.86[EUR][1000 genomes]
rs1657349	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680636	0.92[EUR][1000 genomes]
rs1680639	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704217	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704218	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704221	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704222	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704223	0.92[EUR][1000 genomes]
rs1704226	0.92[EUR][1000 genomes]
rs1704228	0.92[EUR][1000 genomes]
rs1704231	0.83[ASN][1000 genomes]
rs1746042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746044	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2664856	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760670	0.82[EUR][1000 genomes]
rs2781545	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2804031	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471451	0.81[EUR][1000 genomes]
rs479596	1.00[CHB][hapmap]
rs494207	0.82[EUR][1000 genomes]
rs523297	0.91[EUR][1000 genomes]
rs545025	0.97[EUR][1000 genomes]
rs546659	0.82[EUR][1000 genomes]
rs556434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129751	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs583489	0.83[EUR][1000 genomes]
rs58540467	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589655	0.95[EUR][1000 genomes]
rs596152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605414	0.82[EUR][1000 genomes]
rs606314	0.95[EUR][1000 genomes]
rs617019	0.97[EUR][1000 genomes]
rs617542	0.82[EUR][1000 genomes]
rs61855739	0.92[EUR][1000 genomes]
rs61855740	0.92[EUR][1000 genomes]
rs61855743	0.92[EUR][1000 genomes]
rs61857460	0.92[EUR][1000 genomes]
rs622725	0.86[EUR][1000 genomes]
rs629213	0.97[EUR][1000 genomes]
rs646890	0.82[EUR][1000 genomes]
rs649192	0.82[EUR][1000 genomes]
rs661697	0.97[EUR][1000 genomes]
rs673354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674746	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676966	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs677465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680091	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7082177	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097076	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100370	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900072	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906944	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44728000-44734200	Enhancers	Placenta	Placenta
2	chr10:44728200-44731400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44728400-44730600	Enhancers	Fetal Stomach	stomach
4	chr10:44728400-44734800	Enhancers	HepG2	liver
5	chr10:44728600-44730400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:44728600-44731000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:44728600-44731400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:44728800-44730400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:44729000-44730400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:44729000-44730400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:44729200-44730400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:44729600-44737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:44729800-44730400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:44729800-44730400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr10:44729800-44730400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:44730000-44730400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:44730000-44730400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:44730000-44730800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:44730000-44731000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr10:44730200-44731400	Weak transcription	K562	blood
21	chr10:44730200-44733800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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