Variant report

Variant	rs606314
Chromosome Location	chr10:44750479-44750480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44730852..44733719-chr10:44748011..44750876,2	MCF-7	breast:
2	chr10:44749530..44752176-chr10:44753699..44756216,2	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10900000	0.88[EUR][1000 genomes]
rs10900001	0.88[EUR][1000 genomes]
rs10900002	0.88[EUR][1000 genomes]
rs10900003	0.88[EUR][1000 genomes]
rs11238889	0.90[EUR][1000 genomes]
rs11238890	0.90[EUR][1000 genomes]
rs11238891	0.90[EUR][1000 genomes]
rs11238892	0.90[EUR][1000 genomes]
rs11238894	0.90[EUR][1000 genomes]
rs11238898	0.88[EUR][1000 genomes]
rs11238901	0.88[EUR][1000 genomes]
rs11238902	0.88[EUR][1000 genomes]
rs11238911	0.88[EUR][1000 genomes]
rs11238912	0.88[EUR][1000 genomes]
rs11238915	0.88[EUR][1000 genomes]
rs11238916	0.88[EUR][1000 genomes]
rs11238923	0.91[EUR][1000 genomes]
rs11238925	0.91[EUR][1000 genomes]
rs11238927	0.91[EUR][1000 genomes]
rs11238929	0.92[EUR][1000 genomes]
rs11238943	0.92[EUR][1000 genomes]
rs11238944	0.92[EUR][1000 genomes]
rs11238946	0.92[EUR][1000 genomes]
rs11238947	0.91[EUR][1000 genomes]
rs11492882	0.92[EUR][1000 genomes]
rs11511571	0.92[EUR][1000 genomes]
rs11511599	0.92[EUR][1000 genomes]
rs11517223	0.92[EUR][1000 genomes]
rs11517251	0.92[EUR][1000 genomes]
rs11591406	0.88[EUR][1000 genomes]
rs11592445	0.95[EUR][1000 genomes]
rs11594667	0.88[EUR][1000 genomes]
rs11595159	0.88[EUR][1000 genomes]
rs11595946	0.88[EUR][1000 genomes]
rs12355852	0.91[EUR][1000 genomes]
rs1615053	0.88[EUR][1000 genomes]
rs1619661	0.95[EUR][1000 genomes]
rs1632484	0.88[ASN][1000 genomes]
rs1657345	0.97[ASN][1000 genomes]
rs1657346	0.91[EUR][1000 genomes]
rs1657349	0.91[EUR][1000 genomes]
rs1680636	0.88[EUR][1000 genomes]
rs1680639	0.91[EUR][1000 genomes]
rs1704217	0.95[EUR][1000 genomes]
rs1704218	0.95[EUR][1000 genomes]
rs1704221	0.91[EUR][1000 genomes]
rs1704222	0.92[EUR][1000 genomes]
rs1704223	0.88[EUR][1000 genomes]
rs1704226	0.88[EUR][1000 genomes]
rs1704228	0.88[EUR][1000 genomes]
rs17155842	0.97[ASN][1000 genomes]
rs1746042	0.95[EUR][1000 genomes]
rs1746044	0.97[EUR][1000 genomes]
rs2664856	0.88[EUR][1000 genomes]
rs2760670	0.86[EUR][1000 genomes]
rs2781545	0.91[EUR][1000 genomes]
rs2804031	0.91[EUR][1000 genomes]
rs471451	0.81[EUR][1000 genomes]
rs479596	0.88[ASN][1000 genomes]
rs494207	0.86[EUR][1000 genomes]
rs523297	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545025	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs546659	0.86[EUR][1000 genomes]
rs556434	0.95[EUR][1000 genomes]
rs58129751	0.92[EUR][1000 genomes]
rs583489	0.84[EUR][1000 genomes]
rs58540467	0.89[EUR][1000 genomes]
rs589655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs596152	0.95[EUR][1000 genomes]
rs605414	0.86[EUR][1000 genomes]
rs617019	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617035	0.83[EUR][1000 genomes]
rs617542	0.86[EUR][1000 genomes]
rs61855739	0.88[EUR][1000 genomes]
rs61855740	0.88[EUR][1000 genomes]
rs61855743	0.88[EUR][1000 genomes]
rs61857460	0.88[EUR][1000 genomes]
rs622725	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs629213	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs646890	0.86[EUR][1000 genomes]
rs649192	0.86[EUR][1000 genomes]
rs661697	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs673354	0.95[EUR][1000 genomes]
rs673778	0.93[EUR][1000 genomes]
rs674746	0.95[EUR][1000 genomes]
rs676966	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs677465	0.95[EUR][1000 genomes]
rs680091	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7079375	0.95[EUR][1000 genomes]
rs7082177	0.88[EUR][1000 genomes]
rs7086639	0.88[EUR][1000 genomes]
rs7097076	0.91[EUR][1000 genomes]
rs7100370	0.88[EUR][1000 genomes]
rs73286667	0.97[ASN][1000 genomes]
rs7900072	0.88[EUR][1000 genomes]
rs7902040	0.88[EUR][1000 genomes]
rs800314	0.80[ASN][1000 genomes]
rs906944	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44749400-44752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44749400-44753600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:44749400-44754400	Weak transcription	Placenta	Placenta
5	chr10:44749400-44754600	Weak transcription	Pancreas	Pancrea
6	chr10:44749400-44756200	Weak transcription	Lung	lung
7	chr10:44749600-44753600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:44749600-44756400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:44749800-44756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:44750000-44754400	Weak transcription	Liver	Liver
11	chr10:44750200-44756000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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