Variant report

Variant	rs10900000
Chromosome Location	chr10:44694892-44694893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10160170	0.86[EUR][1000 genomes]
rs10899998	0.83[EUR][1000 genomes]
rs10900001	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900003	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes]
rs11238890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs11238891	0.98[EUR][1000 genomes]
rs11238892	0.98[EUR][1000 genomes]
rs11238894	0.98[EUR][1000 genomes]
rs11238898	1.00[EUR][1000 genomes]
rs11238901	1.00[EUR][1000 genomes]
rs11238902	1.00[EUR][1000 genomes]
rs11238909	0.83[EUR][1000 genomes]
rs11238911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238912	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238915	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238916	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238923	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238925	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238927	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238929	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238943	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238944	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238946	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238947	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11492882	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11511571	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11511599	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11517223	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11517251	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11591406	1.00[EUR][1000 genomes]
rs11592445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594667	1.00[EUR][1000 genomes]
rs11595159	1.00[EUR][1000 genomes]
rs11595946	1.00[EUR][1000 genomes]
rs12355852	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1615053	1.00[EUR][1000 genomes]
rs1619661	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657349	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1680636	1.00[EUR][1000 genomes]
rs1680639	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704217	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704218	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704221	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704222	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704223	1.00[EUR][1000 genomes]
rs1704226	1.00[EUR][1000 genomes]
rs1704228	1.00[EUR][1000 genomes]
rs1704231	0.81[ASN][1000 genomes]
rs1746042	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1746044	0.91[EUR][1000 genomes]
rs2664856	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2781545	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2804031	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs479596	1.00[CHB][hapmap]
rs523297	0.84[EUR][1000 genomes]
rs545025	0.89[EUR][1000 genomes]
rs556434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58129751	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58540467	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589655	0.88[EUR][1000 genomes]
rs596152	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606314	0.88[EUR][1000 genomes]
rs617019	0.89[EUR][1000 genomes]
rs61855739	1.00[EUR][1000 genomes]
rs61855740	1.00[EUR][1000 genomes]
rs61855743	1.00[EUR][1000 genomes]
rs61857460	1.00[EUR][1000 genomes]
rs629213	0.89[EUR][1000 genomes]
rs661697	0.89[EUR][1000 genomes]
rs673354	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs673778	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs674746	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs676966	0.89[EUR][1000 genomes]
rs677465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs680091	0.89[EUR][1000 genomes]
rs7079375	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7082177	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086639	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097076	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100370	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900072	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906944	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
4	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
5	chr10:44693200-44695000	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44693400-44695000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:44693400-44695400	Enhancers	HepG2	liver
8	chr10:44693800-44695000	Enhancers	Colon Smooth Muscle	Colon
9	chr10:44694000-44695200	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:44694400-44695000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
11	chr10:44694600-44697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:44694800-44695600	Enhancers	Right Ventricle	heart
13	chr10:44694800-44700400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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