Variant report

Variant	rs589655
Chromosome Location	chr10:44745315-44745316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44744429..44746085-chr10:44747966..44749573,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10900000	0.88[EUR][1000 genomes]
rs10900001	0.88[EUR][1000 genomes]
rs10900002	0.88[EUR][1000 genomes]
rs10900003	0.88[EUR][1000 genomes]
rs11238889	0.90[EUR][1000 genomes]
rs11238890	0.90[EUR][1000 genomes]
rs11238891	0.90[EUR][1000 genomes]
rs11238892	0.90[EUR][1000 genomes]
rs11238894	0.90[EUR][1000 genomes]
rs11238898	0.88[EUR][1000 genomes]
rs11238901	0.88[EUR][1000 genomes]
rs11238902	0.88[EUR][1000 genomes]
rs11238911	0.88[EUR][1000 genomes]
rs11238912	0.88[EUR][1000 genomes]
rs11238915	0.88[EUR][1000 genomes]
rs11238916	0.88[EUR][1000 genomes]
rs11238923	0.91[EUR][1000 genomes]
rs11238925	0.91[EUR][1000 genomes]
rs11238927	0.91[EUR][1000 genomes]
rs11238929	0.92[EUR][1000 genomes]
rs11238943	0.92[EUR][1000 genomes]
rs11238944	0.92[EUR][1000 genomes]
rs11238946	0.92[EUR][1000 genomes]
rs11238947	0.91[EUR][1000 genomes]
rs11492882	0.92[EUR][1000 genomes]
rs11511571	0.92[EUR][1000 genomes]
rs11511599	0.92[EUR][1000 genomes]
rs11517223	0.92[EUR][1000 genomes]
rs11517251	0.92[EUR][1000 genomes]
rs11591406	0.88[EUR][1000 genomes]
rs11592445	0.95[EUR][1000 genomes]
rs11594667	0.88[EUR][1000 genomes]
rs11595159	0.88[EUR][1000 genomes]
rs11595946	0.88[EUR][1000 genomes]
rs12355852	0.91[EUR][1000 genomes]
rs1615053	0.88[EUR][1000 genomes]
rs1619661	0.95[EUR][1000 genomes]
rs1632484	0.91[ASN][1000 genomes]
rs1657345	1.00[ASN][1000 genomes]
rs1657346	0.91[EUR][1000 genomes]
rs1657349	0.91[EUR][1000 genomes]
rs1680636	0.88[EUR][1000 genomes]
rs1680639	0.91[EUR][1000 genomes]
rs1704217	0.95[EUR][1000 genomes]
rs1704218	0.95[EUR][1000 genomes]
rs1704221	0.91[EUR][1000 genomes]
rs1704222	0.92[EUR][1000 genomes]
rs1704223	0.88[EUR][1000 genomes]
rs1704226	0.88[EUR][1000 genomes]
rs1704228	0.88[EUR][1000 genomes]
rs17155842	1.00[ASN][1000 genomes]
rs1746042	0.95[EUR][1000 genomes]
rs1746044	0.97[EUR][1000 genomes]
rs2664856	0.88[EUR][1000 genomes]
rs2760670	0.86[EUR][1000 genomes]
rs2781545	0.91[EUR][1000 genomes]
rs2804031	0.91[EUR][1000 genomes]
rs471451	0.81[EUR][1000 genomes]
rs479596	0.91[ASN][1000 genomes]
rs494207	0.86[EUR][1000 genomes]
rs523297	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545025	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546659	0.86[EUR][1000 genomes]
rs556434	0.95[EUR][1000 genomes]
rs58129751	0.92[EUR][1000 genomes]
rs583489	0.84[EUR][1000 genomes]
rs58540467	0.89[EUR][1000 genomes]
rs596152	0.95[EUR][1000 genomes]
rs605414	0.86[EUR][1000 genomes]
rs606314	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617019	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617035	0.83[EUR][1000 genomes]
rs617542	0.86[EUR][1000 genomes]
rs61855739	0.88[EUR][1000 genomes]
rs61855740	0.88[EUR][1000 genomes]
rs61855743	0.88[EUR][1000 genomes]
rs61857460	0.88[EUR][1000 genomes]
rs622725	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629213	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646890	0.86[EUR][1000 genomes]
rs649192	0.86[EUR][1000 genomes]
rs661697	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673354	0.95[EUR][1000 genomes]
rs673778	0.93[EUR][1000 genomes]
rs674746	0.95[EUR][1000 genomes]
rs676966	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677465	0.95[EUR][1000 genomes]
rs680091	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079375	0.95[EUR][1000 genomes]
rs7082177	0.88[EUR][1000 genomes]
rs7086639	0.88[EUR][1000 genomes]
rs7097076	0.91[EUR][1000 genomes]
rs7100370	0.88[EUR][1000 genomes]
rs73286667	1.00[ASN][1000 genomes]
rs7900072	0.88[EUR][1000 genomes]
rs7902040	0.88[EUR][1000 genomes]
rs800314	0.83[ASN][1000 genomes]
rs906944	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44744800-44745400	Enhancers	HepG2	liver
2	chr10:44744800-44745800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr10:44745000-44745400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr10:44745000-44745400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:44745000-44745400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:44745000-44745400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:44745000-44745400	Active TSS	K562	blood
8	chr10:44745000-44745600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:44745000-44745600	Enhancers	Left Ventricle	heart
10	chr10:44745000-44745600	Enhancers	Lung	lung
11	chr10:44745200-44745400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr10:44745200-44745400	Bivalent Enhancer	Placenta	Placenta
13	chr10:44745200-44745600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:44745200-44745600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:44745200-44745600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44745200-44745600	Enhancers	Adipose Nuclei	Adipose

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