Variant report

Variant	rs622725
Chromosome Location	chr10:44760494-44760495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11238889	0.81[EUR][1000 genomes]
rs11238890	0.81[EUR][1000 genomes]
rs11238891	0.81[EUR][1000 genomes]
rs11238892	0.81[EUR][1000 genomes]
rs11238894	0.81[EUR][1000 genomes]
rs11238923	0.82[EUR][1000 genomes]
rs11238925	0.82[EUR][1000 genomes]
rs11238927	0.82[EUR][1000 genomes]
rs11238929	0.83[EUR][1000 genomes]
rs11238943	0.83[EUR][1000 genomes]
rs11238944	0.83[EUR][1000 genomes]
rs11238946	0.83[EUR][1000 genomes]
rs11238947	0.82[EUR][1000 genomes]
rs11492882	0.83[EUR][1000 genomes]
rs11511571	0.83[EUR][1000 genomes]
rs11511599	0.83[EUR][1000 genomes]
rs11517223	0.83[EUR][1000 genomes]
rs11517251	0.83[EUR][1000 genomes]
rs11592445	0.86[EUR][1000 genomes]
rs12355852	0.82[EUR][1000 genomes]
rs1619661	0.86[EUR][1000 genomes]
rs1632484	0.91[ASN][1000 genomes]
rs1657345	1.00[ASN][1000 genomes]
rs1657346	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1657349	0.82[EUR][1000 genomes]
rs1680639	0.82[EUR][1000 genomes]
rs1704217	0.86[EUR][1000 genomes]
rs1704218	0.86[EUR][1000 genomes]
rs1704221	0.82[EUR][1000 genomes]
rs1704222	0.83[EUR][1000 genomes]
rs17155842	1.00[ASN][1000 genomes]
rs1746042	0.86[EUR][1000 genomes]
rs1746044	0.88[EUR][1000 genomes]
rs2781545	0.82[EUR][1000 genomes]
rs2804031	0.82[EUR][1000 genomes]
rs479596	0.91[ASN][1000 genomes]
rs523297	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545025	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556434	0.86[EUR][1000 genomes]
rs58129751	0.83[EUR][1000 genomes]
rs589655	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596152	0.86[EUR][1000 genomes]
rs606314	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617019	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629213	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661697	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673354	0.86[EUR][1000 genomes]
rs673778	0.83[EUR][1000 genomes]
rs674746	0.86[EUR][1000 genomes]
rs676966	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677465	0.86[EUR][1000 genomes]
rs680091	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079375	0.86[EUR][1000 genomes]
rs7097076	0.82[EUR][1000 genomes]
rs73286667	1.00[ASN][1000 genomes]
rs800314	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3495951	chr10:44757085-44761391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3496062	chr10:44757120-44761379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3495840	chr10:44757152-44761335	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3496173	chr10:44757152-44761335	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44756000-44761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:44756200-44760800	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:44757200-44760600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44758400-44762200	Weak transcription	Right Ventricle	heart
5	chr10:44760200-44761000	Enhancers	GM12878-XiMat	blood

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