Variant report

Variant	rs11238894
Chromosome Location	chr10:44671851-44671852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44671351..44672873-chr10:44688913..44691046,2	K562	blood:
2	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10160170	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899998	0.82[EUR][1000 genomes]
rs10900000	0.98[EUR][1000 genomes]
rs10900001	0.98[EUR][1000 genomes]
rs10900002	0.98[EUR][1000 genomes]
rs10900003	0.98[EUR][1000 genomes]
rs11238889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238898	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238901	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238902	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238909	0.82[EUR][1000 genomes]
rs11238911	0.98[EUR][1000 genomes]
rs11238912	0.98[EUR][1000 genomes]
rs11238915	0.98[EUR][1000 genomes]
rs11238916	0.98[EUR][1000 genomes]
rs11238923	0.95[EUR][1000 genomes]
rs11238925	0.95[EUR][1000 genomes]
rs11238927	0.95[EUR][1000 genomes]
rs11238929	0.94[EUR][1000 genomes]
rs11238943	0.94[EUR][1000 genomes]
rs11238944	0.94[EUR][1000 genomes]
rs11238946	0.94[EUR][1000 genomes]
rs11238947	0.92[EUR][1000 genomes]
rs11492882	0.94[EUR][1000 genomes]
rs11511571	0.94[EUR][1000 genomes]
rs11511599	0.94[EUR][1000 genomes]
rs11517223	0.94[EUR][1000 genomes]
rs11517251	0.94[EUR][1000 genomes]
rs11591406	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592445	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs11594667	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595159	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595946	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355852	0.95[EUR][1000 genomes]
rs1615053	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619661	0.91[EUR][1000 genomes]
rs1657346	0.81[EUR][1000 genomes]
rs1657349	0.87[EUR][1000 genomes]
rs1680636	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680639	0.95[EUR][1000 genomes]
rs1704217	0.91[EUR][1000 genomes]
rs1704218	0.91[EUR][1000 genomes]
rs1704221	0.92[EUR][1000 genomes]
rs1704222	0.94[EUR][1000 genomes]
rs1704223	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704226	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704228	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746042	0.91[EUR][1000 genomes]
rs1746044	0.92[EUR][1000 genomes]
rs2664856	0.93[EUR][1000 genomes]
rs2781545	0.87[EUR][1000 genomes]
rs2804031	0.95[EUR][1000 genomes]
rs479596	0.85[CHB][hapmap]
rs523297	0.85[EUR][1000 genomes]
rs545025	0.91[EUR][1000 genomes]
rs556434	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs58129751	0.94[EUR][1000 genomes]
rs58540467	0.91[EUR][1000 genomes]
rs589655	0.90[EUR][1000 genomes]
rs596152	0.91[EUR][1000 genomes]
rs606314	0.90[EUR][1000 genomes]
rs617019	0.91[EUR][1000 genomes]
rs61855739	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855740	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855743	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857460	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs622725	0.81[EUR][1000 genomes]
rs629213	0.91[EUR][1000 genomes]
rs661697	0.91[EUR][1000 genomes]
rs673354	0.91[EUR][1000 genomes]
rs673778	0.88[EUR][1000 genomes]
rs674746	0.91[EUR][1000 genomes]
rs676966	0.91[EUR][1000 genomes]
rs677465	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs680091	0.91[EUR][1000 genomes]
rs7079375	0.91[EUR][1000 genomes]
rs7082177	0.98[EUR][1000 genomes]
rs7086639	0.98[EUR][1000 genomes]
rs7097076	0.95[EUR][1000 genomes]
rs7100370	0.98[EUR][1000 genomes]
rs7900072	0.98[EUR][1000 genomes]
rs7902040	0.98[EUR][1000 genomes]
rs906944	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
2	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
4	chr10:44669400-44672600	Weak transcription	NHDF-Ad	bronchial
5	chr10:44669600-44674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44669600-44674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
9	chr10:44670600-44675400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:44671000-44672200	Enhancers	Fetal Kidney	kidney
11	chr10:44671600-44672000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:44671600-44673800	Enhancers	HepG2	liver
13	chr10:44671800-44672000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:44671800-44672000	Enhancers	Fetal Heart	heart
15	chr10:44671800-44672000	Enhancers	Right Ventricle	heart
16	chr10:44671800-44672200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:44671800-44672200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links