Variant report

Variant	rs1680639
Chromosome Location	chr10:44701754-44701755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10160170	0.84[EUR][1000 genomes]
rs10899998	0.80[EUR][1000 genomes]
rs10900000	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900001	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900002	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900003	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238889	0.95[EUR][1000 genomes]
rs11238890	0.95[EUR][1000 genomes]
rs11238891	0.95[EUR][1000 genomes]
rs11238892	0.95[EUR][1000 genomes]
rs11238894	0.95[EUR][1000 genomes]
rs11238898	0.97[EUR][1000 genomes]
rs11238901	0.97[EUR][1000 genomes]
rs11238902	0.97[EUR][1000 genomes]
rs11238909	0.80[EUR][1000 genomes]
rs11238911	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238912	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238915	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238916	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238929	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238943	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238944	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238946	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238947	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11492882	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511571	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511599	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517223	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11517251	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591406	0.97[EUR][1000 genomes]
rs11592445	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594667	0.97[EUR][1000 genomes]
rs11595159	0.97[EUR][1000 genomes]
rs11595946	0.97[EUR][1000 genomes]
rs12355852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615053	0.97[EUR][1000 genomes]
rs1619661	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657346	0.82[EUR][1000 genomes]
rs1657349	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680636	0.97[EUR][1000 genomes]
rs1704217	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704218	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704221	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704222	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704223	0.97[EUR][1000 genomes]
rs1704226	0.97[EUR][1000 genomes]
rs1704228	0.97[EUR][1000 genomes]
rs1704231	0.83[ASN][1000 genomes]
rs1746042	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746044	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2664856	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781545	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2804031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523297	0.86[EUR][1000 genomes]
rs545025	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs556434	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129751	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58540467	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589655	0.91[EUR][1000 genomes]
rs596152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606314	0.91[EUR][1000 genomes]
rs617019	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61855739	0.97[EUR][1000 genomes]
rs61855740	0.97[EUR][1000 genomes]
rs61855743	0.97[EUR][1000 genomes]
rs61857460	0.97[EUR][1000 genomes]
rs622725	0.82[EUR][1000 genomes]
rs629213	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs661697	0.92[EUR][1000 genomes]
rs673354	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673778	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674746	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676966	0.92[EUR][1000 genomes]
rs677465	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680091	0.92[EUR][1000 genomes]
rs7079375	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082177	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086639	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097076	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100370	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900072	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902040	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906944	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
2	chr10:44698400-44701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:44698800-44701800	Weak transcription	HepG2	liver
4	chr10:44700200-44703000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44700400-44701800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44700600-44701800	Enhancers	Fetal Lung	lung
7	chr10:44700600-44702400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44700800-44702000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:44700800-44702600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:44701000-44702200	Enhancers	Fetal Stomach	stomach
11	chr10:44701200-44701800	Enhancers	Fetal Heart	heart
12	chr10:44701200-44702000	Enhancers	NHDF-Ad	bronchial
13	chr10:44701200-44705000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:44701200-44705400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:44701200-44705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:44701600-44701800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:44701600-44701800	Enhancers	Ovary	ovary
18	chr10:44701600-44703000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links