Variant report

Variant	rs61855739
Chromosome Location	chr10:44679603-44679604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44678734..44680302-chr10:44689215..44691218,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-4	chr10:44679398-44679797	NONHSAT013025

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10160170	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899998	0.83[EUR][1000 genomes]
rs10900000	1.00[EUR][1000 genomes]
rs10900001	1.00[EUR][1000 genomes]
rs10900002	1.00[EUR][1000 genomes]
rs10900003	1.00[EUR][1000 genomes]
rs11238889	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238890	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238891	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238892	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238894	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238898	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238909	0.83[EUR][1000 genomes]
rs11238911	1.00[EUR][1000 genomes]
rs11238912	1.00[EUR][1000 genomes]
rs11238915	1.00[EUR][1000 genomes]
rs11238916	1.00[EUR][1000 genomes]
rs11238923	0.97[EUR][1000 genomes]
rs11238925	0.97[EUR][1000 genomes]
rs11238927	0.97[EUR][1000 genomes]
rs11238929	0.95[EUR][1000 genomes]
rs11238943	0.95[EUR][1000 genomes]
rs11238944	0.95[EUR][1000 genomes]
rs11238946	0.95[EUR][1000 genomes]
rs11238947	0.94[EUR][1000 genomes]
rs11492882	0.95[EUR][1000 genomes]
rs11511571	0.95[EUR][1000 genomes]
rs11511599	0.95[EUR][1000 genomes]
rs11517223	0.95[EUR][1000 genomes]
rs11517251	0.95[EUR][1000 genomes]
rs11591406	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592445	0.92[EUR][1000 genomes]
rs11594667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595946	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355852	0.97[EUR][1000 genomes]
rs1615053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619661	0.92[EUR][1000 genomes]
rs1657349	0.88[EUR][1000 genomes]
rs1680635	0.83[AFR][1000 genomes]
rs1680636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680639	0.97[EUR][1000 genomes]
rs1704217	0.92[EUR][1000 genomes]
rs1704218	0.92[EUR][1000 genomes]
rs1704221	0.94[EUR][1000 genomes]
rs1704222	0.95[EUR][1000 genomes]
rs1704223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704226	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704228	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746042	0.92[EUR][1000 genomes]
rs1746044	0.91[EUR][1000 genomes]
rs2664856	0.94[EUR][1000 genomes]
rs2781545	0.88[EUR][1000 genomes]
rs2804031	0.97[EUR][1000 genomes]
rs3892077	0.85[AFR][1000 genomes]
rs523297	0.84[EUR][1000 genomes]
rs545025	0.89[EUR][1000 genomes]
rs556434	0.92[EUR][1000 genomes]
rs58129751	0.95[EUR][1000 genomes]
rs58540467	0.92[EUR][1000 genomes]
rs589655	0.88[EUR][1000 genomes]
rs596152	0.92[EUR][1000 genomes]
rs606314	0.88[EUR][1000 genomes]
rs617019	0.89[EUR][1000 genomes]
rs61855740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855743	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857460	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629213	0.89[EUR][1000 genomes]
rs661697	0.89[EUR][1000 genomes]
rs673354	0.92[EUR][1000 genomes]
rs673778	0.89[EUR][1000 genomes]
rs674746	0.92[EUR][1000 genomes]
rs676966	0.89[EUR][1000 genomes]
rs677465	0.92[EUR][1000 genomes]
rs680091	0.89[EUR][1000 genomes]
rs7079375	0.92[EUR][1000 genomes]
rs7082177	1.00[EUR][1000 genomes]
rs7086639	1.00[EUR][1000 genomes]
rs7097076	0.97[EUR][1000 genomes]
rs7100370	1.00[EUR][1000 genomes]
rs7900072	1.00[EUR][1000 genomes]
rs7902040	1.00[EUR][1000 genomes]
rs906944	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676200-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:44678000-44680800	Enhancers	NHDF-Ad	bronchial
8	chr10:44678400-44679800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:44678400-44679800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:44678400-44680400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:44678400-44680400	Enhancers	NHLF	lung
12	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44678600-44680000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
15	chr10:44679200-44679800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:44679200-44679800	Enhancers	Fetal Stomach	stomach
17	chr10:44679200-44680800	Weak transcription	Right Atrium	heart
18	chr10:44679400-44680000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:44679400-44680400	Enhancers	Ovary	ovary
20	chr10:44679400-44680400	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:44679600-44680000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr10:44679600-44680200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:44679600-44680600	Enhancers	Left Ventricle	heart
24	chr10:44679600-44681400	Weak transcription	Adipose Nuclei	Adipose

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