Variant report

Variant	rs3892077
Chromosome Location	chr10:44672151-44672152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11238889	0.86[YRI][hapmap]
rs11238890	0.93[YRI][hapmap]
rs11238901	0.85[AFR][1000 genomes]
rs11238902	0.84[AFR][1000 genomes]
rs11595159	0.85[AFR][1000 genomes]
rs11595946	0.81[AFR][1000 genomes]
rs1680635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704223	0.85[AFR][1000 genomes]
rs1704226	0.85[AFR][1000 genomes]
rs2802484	0.85[EUR][1000 genomes]
rs2804038	0.85[EUR][1000 genomes]
rs475926	0.86[CEU][hapmap]
rs61855739	0.85[AFR][1000 genomes]
rs61855740	0.85[AFR][1000 genomes]
rs61857460	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3892077	HNRNPF	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
2	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
4	chr10:44669400-44672600	Weak transcription	NHDF-Ad	bronchial
5	chr10:44669600-44674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44669600-44674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
9	chr10:44670600-44675400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:44671000-44672200	Enhancers	Fetal Kidney	kidney
11	chr10:44671600-44673800	Enhancers	HepG2	liver
12	chr10:44671800-44672200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:44671800-44672200	Enhancers	Fetal Lung	lung
14	chr10:44672000-44672400	Weak transcription	Fetal Heart	heart
15	chr10:44672000-44675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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