Variant report

Variant	rs11238909
Chromosome Location	chr10:44688088-44688089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10899997	1.00[ASN][1000 genomes]
rs10899998	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899999	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900000	0.83[EUR][1000 genomes]
rs10900001	0.83[EUR][1000 genomes]
rs10900002	0.83[EUR][1000 genomes]
rs10900003	0.83[EUR][1000 genomes]
rs11238889	0.82[EUR][1000 genomes]
rs11238890	0.82[EUR][1000 genomes]
rs11238891	0.82[EUR][1000 genomes]
rs11238892	0.82[EUR][1000 genomes]
rs11238894	0.82[EUR][1000 genomes]
rs11238898	0.83[EUR][1000 genomes]
rs11238901	0.83[EUR][1000 genomes]
rs11238902	0.83[EUR][1000 genomes]
rs11238904	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238905	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238906	0.92[ASN][1000 genomes]
rs11238907	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238911	0.83[EUR][1000 genomes]
rs11238912	0.83[EUR][1000 genomes]
rs11238915	0.83[EUR][1000 genomes]
rs11238916	0.83[EUR][1000 genomes]
rs11238923	0.80[EUR][1000 genomes]
rs11238925	0.80[EUR][1000 genomes]
rs11238927	0.80[EUR][1000 genomes]
rs11591406	0.83[EUR][1000 genomes]
rs11594667	0.83[EUR][1000 genomes]
rs11595159	0.83[EUR][1000 genomes]
rs11595946	0.83[EUR][1000 genomes]
rs11598296	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598314	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817838	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355852	0.80[EUR][1000 genomes]
rs12415866	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509929	1.00[ASN][1000 genomes]
rs1509931	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545845	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1615053	0.83[EUR][1000 genomes]
rs1623851	1.00[ASN][1000 genomes]
rs1626459	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627329	1.00[ASN][1000 genomes]
rs1680636	0.83[EUR][1000 genomes]
rs1680639	0.80[EUR][1000 genomes]
rs1680641	0.80[ASN][1000 genomes]
rs1704214	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704223	0.83[EUR][1000 genomes]
rs1704226	0.83[EUR][1000 genomes]
rs1704228	0.83[EUR][1000 genomes]
rs1704231	0.81[EUR][1000 genomes]
rs2246891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624681	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624682	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624683	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2664860	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2760670	0.87[EUR][1000 genomes]
rs2781543	0.82[EUR][1000 genomes]
rs2802482	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2804031	0.80[EUR][1000 genomes]
rs2804036	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35339178	0.91[ASN][1000 genomes]
rs494207	0.87[EUR][1000 genomes]
rs4948857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546659	0.87[EUR][1000 genomes]
rs583489	0.88[EUR][1000 genomes]
rs605414	0.87[EUR][1000 genomes]
rs617035	0.84[EUR][1000 genomes]
rs617542	0.87[EUR][1000 genomes]
rs61855739	0.83[EUR][1000 genomes]
rs61855740	0.83[EUR][1000 genomes]
rs61855743	0.83[EUR][1000 genomes]
rs61855758	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857460	0.83[EUR][1000 genomes]
rs646890	0.87[EUR][1000 genomes]
rs649192	0.87[EUR][1000 genomes]
rs7082177	0.83[EUR][1000 genomes]
rs7086639	0.83[EUR][1000 genomes]
rs7097076	0.80[EUR][1000 genomes]
rs7100370	0.83[EUR][1000 genomes]
rs7900072	0.83[EUR][1000 genomes]
rs7902040	0.83[EUR][1000 genomes]
rs7909598	1.00[ASN][1000 genomes]
rs7917089	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:44682800-44688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44686800-44692000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44687000-44692000	Enhancers	Colon Smooth Muscle	Colon
6	chr10:44687200-44690400	Weak transcription	HSMM	muscle
7	chr10:44687400-44690400	Enhancers	HepG2	liver
8	chr10:44687600-44688800	Weak transcription	NHDF-Ad	bronchial
9	chr10:44688000-44690200	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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