Variant report

Variant	rs2802482
Chromosome Location	chr10:44675851-44675852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10160170	0.83[EUR][1000 genomes]
rs10899997	0.99[ASN][1000 genomes]
rs10899998	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899999	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238904	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238905	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238906	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238907	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238909	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598296	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598314	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11817838	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415866	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1509929	0.99[ASN][1000 genomes]
rs1509931	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1545845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623851	0.99[ASN][1000 genomes]
rs1626459	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1627329	0.99[ASN][1000 genomes]
rs1704214	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1704231	0.92[EUR][1000 genomes]
rs2246891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624683	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664860	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802484	0.91[AFR][1000 genomes]
rs2804036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804038	0.91[AFR][1000 genomes]
rs35339178	0.91[ASN][1000 genomes]
rs4948857	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61855758	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909598	0.99[ASN][1000 genomes]
rs7917089	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
2	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
3	chr10:44674600-44677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:44674800-44676400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:44674800-44676400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:44675000-44676000	Enhancers	NHLF	lung
7	chr10:44675000-44676200	Enhancers	HSMM	muscle
8	chr10:44675200-44676600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44675200-44677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:44675200-44677200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:44675400-44676000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
12	chr10:44675400-44676000	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:44675400-44676000	Enhancers	HepG2	liver
14	chr10:44675400-44676000	Enhancers	Osteobl	bone
15	chr10:44675400-44676200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44675400-44676200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:44675400-44676200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44675400-44676200	Enhancers	Fetal Muscle Leg	muscle
19	chr10:44675400-44676400	Flanking Active TSS	NHDF-Ad	bronchial
20	chr10:44675400-44676600	Enhancers	NH-A	brain
21	chr10:44675400-44676800	Enhancers	Colon Smooth Muscle	Colon
22	chr10:44675400-44677000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44675600-44676000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:44675600-44676200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:44675600-44676200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:44675600-44676200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:44675600-44676200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr10:44675600-44676400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:44675600-44676400	Enhancers	Adipose Nuclei	Adipose
30	chr10:44675600-44676400	Enhancers	Rectal Smooth Muscle	rectum
31	chr10:44675800-44676000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:44675800-44676200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44675800-44676400	Enhancers	HSMMtube	muscle
34	chr10:44675800-44676600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:44675800-44678400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:44675800-44679400	Weak transcription	Ovary	ovary

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