Variant report

Variant	rs1509931
Chromosome Location	chr10:44682080-44682081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160170	0.83[EUR][1000 genomes]
rs10899997	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10899998	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238889	0.88[CEU][hapmap]
rs11238890	0.88[CEU][hapmap]
rs11238904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238906	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238909	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592445	0.92[CEU][hapmap]
rs11598296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509929	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1509930	0.94[AFR][1000 genomes]
rs1545845	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1623851	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1626459	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627329	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1680641	0.80[ASN][1000 genomes]
rs1704214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704231	0.93[EUR][1000 genomes]
rs2246891	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624681	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624682	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624683	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2664860	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802482	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2804036	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35339178	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4948857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556434	0.88[CEU][hapmap]
rs61855758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677465	0.87[CEU][hapmap]
rs7909598	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
6	chr10:44680200-44683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:44680600-44682400	Weak transcription	Left Ventricle	heart
9	chr10:44681200-44682600	Enhancers	NHDF-Ad	bronchial
10	chr10:44681400-44682200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:44681400-44682800	Enhancers	HepG2	liver
12	chr10:44681600-44682200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:44681600-44682400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:44681800-44682200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:44681800-44682200	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:44681800-44682200	Enhancers	Fetal Muscle Leg	muscle
17	chr10:44681800-44682200	Bivalent Enhancer	NHLF	lung
18	chr10:44681800-44682400	Enhancers	Fetal Stomach	stomach
19	chr10:44681800-44682600	Enhancers	Ovary	ovary
20	chr10:44681800-44682800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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