Variant report

Variant	rs1545845
Chromosome Location	chr10:44679802-44679803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44678734..44680302-chr10:44689215..44691218,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10160170	0.83[EUR][1000 genomes]
rs10899997	0.99[ASN][1000 genomes]
rs10899998	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899999	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238904	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238905	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238906	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238907	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238909	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598296	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598314	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11817838	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415866	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1509929	0.99[ASN][1000 genomes]
rs1509931	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1623851	0.99[ASN][1000 genomes]
rs1626459	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1627329	0.99[ASN][1000 genomes]
rs1704214	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1704231	0.92[EUR][1000 genomes]
rs2246891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624683	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664860	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802484	0.90[AFR][1000 genomes]
rs2804036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804038	0.90[AFR][1000 genomes]
rs35339178	0.91[ASN][1000 genomes]
rs4948857	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61855758	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909598	0.99[ASN][1000 genomes]
rs7917089	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676200-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:44678000-44680800	Enhancers	NHDF-Ad	bronchial
8	chr10:44678400-44680400	Enhancers	Colon Smooth Muscle	Colon
9	chr10:44678400-44680400	Enhancers	NHLF	lung
10	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44678600-44680000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
13	chr10:44679200-44680800	Weak transcription	Right Atrium	heart
14	chr10:44679400-44680000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:44679400-44680400	Enhancers	Ovary	ovary
16	chr10:44679400-44680400	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:44679600-44680000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:44679600-44680200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:44679600-44680600	Enhancers	Left Ventricle	heart
20	chr10:44679600-44681400	Weak transcription	Adipose Nuclei	Adipose
21	chr10:44679800-44680000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:44679800-44680200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:44679800-44681000	Enhancers	Fetal Heart	heart
24	chr10:44679800-44681800	Weak transcription	Fetal Stomach	stomach

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