Variant report

Variant	rs35339178
Chromosome Location	chr10:44681592-44681593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10899997	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899998	0.91[ASN][1000 genomes]
rs10899999	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11238904	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11238905	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11238906	0.84[ASN][1000 genomes]
rs11238907	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11238909	0.91[ASN][1000 genomes]
rs11598296	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11598314	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11817838	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12415866	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1509929	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1509931	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1545845	0.91[ASN][1000 genomes]
rs1623851	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1626459	0.91[ASN][1000 genomes]
rs1627329	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704214	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2246891	0.91[ASN][1000 genomes]
rs2624681	0.91[ASN][1000 genomes]
rs2624682	0.91[ASN][1000 genomes]
rs2624683	0.91[ASN][1000 genomes]
rs2664860	0.93[ASN][1000 genomes]
rs2802482	0.91[ASN][1000 genomes]
rs2804036	0.91[ASN][1000 genomes]
rs4948857	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61855758	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7909598	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7917089	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
8	chr10:44679800-44681800	Weak transcription	Fetal Stomach	stomach
9	chr10:44680200-44683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:44680400-44681800	Weak transcription	Ovary	ovary
11	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:44680600-44681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44680600-44682400	Weak transcription	Left Ventricle	heart
14	chr10:44681200-44682600	Enhancers	NHDF-Ad	bronchial
15	chr10:44681400-44681600	Enhancers	Adipose Nuclei	Adipose
16	chr10:44681400-44682000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44681400-44682200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44681400-44682800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links