Variant report

Variant	rs10160170
Chromosome Location	chr10:44692843-44692844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10899999	0.81[EUR][1000 genomes]
rs10900000	0.86[EUR][1000 genomes]
rs10900001	0.86[EUR][1000 genomes]
rs10900002	0.86[EUR][1000 genomes]
rs10900003	0.86[EUR][1000 genomes]
rs11238889	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238890	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238891	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238892	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238894	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238898	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238901	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238902	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238904	0.83[EUR][1000 genomes]
rs11238905	0.83[EUR][1000 genomes]
rs11238907	0.83[EUR][1000 genomes]
rs11238911	0.86[EUR][1000 genomes]
rs11238912	0.86[EUR][1000 genomes]
rs11238915	0.86[EUR][1000 genomes]
rs11238916	0.86[EUR][1000 genomes]
rs11238923	0.84[EUR][1000 genomes]
rs11238925	0.84[EUR][1000 genomes]
rs11238927	0.84[EUR][1000 genomes]
rs11238929	0.82[EUR][1000 genomes]
rs11238943	0.82[EUR][1000 genomes]
rs11238944	0.82[EUR][1000 genomes]
rs11238946	0.82[EUR][1000 genomes]
rs11238947	0.81[EUR][1000 genomes]
rs11492882	0.82[EUR][1000 genomes]
rs11511571	0.82[EUR][1000 genomes]
rs11511599	0.82[EUR][1000 genomes]
rs11517223	0.82[EUR][1000 genomes]
rs11517251	0.82[EUR][1000 genomes]
rs11591406	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11592445	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs11594667	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11595159	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11595946	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598296	0.83[EUR][1000 genomes]
rs11598314	0.83[EUR][1000 genomes]
rs11817838	0.83[EUR][1000 genomes]
rs12355852	0.84[EUR][1000 genomes]
rs12415866	0.83[EUR][1000 genomes]
rs1509931	0.83[EUR][1000 genomes]
rs1545845	0.83[EUR][1000 genomes]
rs1615053	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626459	0.83[EUR][1000 genomes]
rs1680636	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1680639	0.84[EUR][1000 genomes]
rs1704214	0.83[EUR][1000 genomes]
rs1704221	0.81[EUR][1000 genomes]
rs1704222	0.82[EUR][1000 genomes]
rs1704223	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1704226	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1704228	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1704231	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2246891	0.83[EUR][1000 genomes]
rs2624681	0.83[EUR][1000 genomes]
rs2624682	0.83[EUR][1000 genomes]
rs2624683	0.83[EUR][1000 genomes]
rs2664856	0.81[EUR][1000 genomes]
rs2664860	0.81[EUR][1000 genomes]
rs2802482	0.83[EUR][1000 genomes]
rs2804031	0.84[EUR][1000 genomes]
rs2804036	0.83[EUR][1000 genomes]
rs479596	0.85[CHB][hapmap]
rs4948857	0.83[EUR][1000 genomes]
rs556434	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs58129751	0.82[EUR][1000 genomes]
rs61855739	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61855740	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61855743	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61855758	0.83[EUR][1000 genomes]
rs61857460	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs677465	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs7082177	0.86[EUR][1000 genomes]
rs7086639	0.86[EUR][1000 genomes]
rs7097076	0.84[EUR][1000 genomes]
rs7100370	0.86[EUR][1000 genomes]
rs7900072	0.86[EUR][1000 genomes]
rs7902040	0.86[EUR][1000 genomes]
rs7917089	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44691000-44694200	Weak transcription	Placenta	Placenta
4	chr10:44691400-44693400	Weak transcription	Fetal Stomach	stomach
5	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
6	chr10:44691600-44694800	Weak transcription	Right Ventricle	heart
7	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
8	chr10:44691800-44693200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:44691800-44693200	Weak transcription	HSMM	muscle
10	chr10:44691800-44693600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:44691800-44693600	Weak transcription	HSMMtube	muscle
12	chr10:44691800-44693800	Weak transcription	NHLF	lung
13	chr10:44691800-44694400	Weak transcription	Left Ventricle	heart
14	chr10:44692000-44693000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:44692000-44693000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:44692000-44693000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:44692000-44693000	Weak transcription	Ovary	ovary
18	chr10:44692000-44693000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:44692000-44693400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:44692000-44693400	Weak transcription	NHDF-Ad	bronchial
21	chr10:44692000-44693800	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:44692000-44694400	Weak transcription	Stomach Mucosa	stomach
23	chr10:44692200-44693800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44692600-44693400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links