Variant report

Variant	rs2781543
Chromosome Location	chr10:44744566-44744567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44744429..44746085-chr10:44747966..44749573,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10899998	0.82[EUR][1000 genomes]
rs11238909	0.82[EUR][1000 genomes]
rs2576354	0.87[ASN][1000 genomes]
rs2576355	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2760670	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473501	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs474281	0.88[ASN][1000 genomes]
rs487465	0.83[ASN][1000 genomes]
rs492152	0.83[ASN][1000 genomes]
rs494207	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498810	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs501120	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs504799	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs510785	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs513391	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs518594	0.83[ASN][1000 genomes]
rs522293	0.83[ASN][1000 genomes]
rs534079	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs535176	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs535949	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs541483	0.88[ASN][1000 genomes]
rs546659	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs554565	0.83[ASN][1000 genomes]
rs559469	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs559580	0.83[ASN][1000 genomes]
rs573141	0.83[ASN][1000 genomes]
rs579058	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs583489	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs587375	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs604674	0.83[ASN][1000 genomes]
rs605414	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs605445	0.83[ASN][1000 genomes]
rs607363	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs607592	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs607609	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs607760	0.83[ASN][1000 genomes]
rs617035	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs617542	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs620356	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs620828	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs622472	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs622956	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs634963	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs635612	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs646890	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs649192	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs665855	0.83[ASN][1000 genomes]
rs670056	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs671765	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs683297	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs684196	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs684521	0.83[ASN][1000 genomes]
rs684666	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs687175	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs694425	0.82[ASN][1000 genomes]
rs915083	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44738000-44745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44740400-44745000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:44741000-44745000	Weak transcription	Placenta	Placenta
4	chr10:44741400-44744800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links