Variant report

Variant	rs1704217
Chromosome Location	chr10:44729307-44729308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44729297..44731322-chr10:44735217..44738184,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10900000	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900001	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900002	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900003	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238889	0.91[EUR][1000 genomes]
rs11238890	0.91[EUR][1000 genomes]
rs11238891	0.91[EUR][1000 genomes]
rs11238892	0.91[EUR][1000 genomes]
rs11238894	0.91[EUR][1000 genomes]
rs11238898	0.92[EUR][1000 genomes]
rs11238901	0.92[EUR][1000 genomes]
rs11238902	0.92[EUR][1000 genomes]
rs11238911	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238912	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238916	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238923	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238925	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238927	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238929	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238943	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238944	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238946	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238947	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11492882	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511571	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511599	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517223	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11517251	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591406	0.92[EUR][1000 genomes]
rs11592445	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594667	0.92[EUR][1000 genomes]
rs11595159	0.92[EUR][1000 genomes]
rs11595946	0.92[EUR][1000 genomes]
rs12355852	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615053	0.92[EUR][1000 genomes]
rs1619661	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657346	0.86[EUR][1000 genomes]
rs1657349	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680636	0.92[EUR][1000 genomes]
rs1680639	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704218	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704221	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704222	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704223	0.92[EUR][1000 genomes]
rs1704226	0.92[EUR][1000 genomes]
rs1704228	0.92[EUR][1000 genomes]
rs1704231	0.83[ASN][1000 genomes]
rs1746042	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746044	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2664856	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760670	0.82[EUR][1000 genomes]
rs2781545	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2804031	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471451	0.81[EUR][1000 genomes]
rs494207	0.82[EUR][1000 genomes]
rs523297	0.91[EUR][1000 genomes]
rs545025	0.97[EUR][1000 genomes]
rs546659	0.82[EUR][1000 genomes]
rs556434	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129751	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs583489	0.83[EUR][1000 genomes]
rs58540467	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589655	0.95[EUR][1000 genomes]
rs596152	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605414	0.82[EUR][1000 genomes]
rs606314	0.95[EUR][1000 genomes]
rs617019	0.97[EUR][1000 genomes]
rs617542	0.82[EUR][1000 genomes]
rs61855739	0.92[EUR][1000 genomes]
rs61855740	0.92[EUR][1000 genomes]
rs61855743	0.92[EUR][1000 genomes]
rs61857460	0.92[EUR][1000 genomes]
rs622725	0.86[EUR][1000 genomes]
rs629213	0.97[EUR][1000 genomes]
rs646890	0.82[EUR][1000 genomes]
rs649192	0.82[EUR][1000 genomes]
rs661697	0.97[EUR][1000 genomes]
rs673354	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673778	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674746	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676966	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs677465	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680091	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7079375	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082177	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097076	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100370	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900072	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906944	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44723000-44729800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:44728000-44730200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44728000-44734200	Enhancers	Placenta	Placenta
4	chr10:44728200-44730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:44728200-44731400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:44728400-44730600	Enhancers	Fetal Stomach	stomach
7	chr10:44728400-44734800	Enhancers	HepG2	liver
8	chr10:44728600-44729400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:44728600-44729600	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44728600-44730000	Enhancers	Fetal Lung	lung
11	chr10:44728600-44730200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:44728600-44730200	Enhancers	Fetal Muscle Leg	muscle
13	chr10:44728600-44730400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:44728600-44731000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:44728600-44731400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:44728800-44729400	Enhancers	Fetal Heart	heart
17	chr10:44728800-44729600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:44728800-44729600	Enhancers	Brain Germinal Matrix	brain
19	chr10:44728800-44729600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr10:44728800-44729600	Enhancers	Fetal Brain Male	brain
21	chr10:44728800-44729600	Enhancers	Fetal Brain Female	brain
22	chr10:44728800-44730200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:44728800-44730400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr10:44729000-44729600	Flanking Active TSS	K562	blood
25	chr10:44729000-44729800	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:44729000-44729800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr10:44729000-44729800	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr10:44729000-44730200	Enhancers	Ovary	ovary
29	chr10:44729000-44730400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:44729000-44730400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr10:44729200-44729400	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr10:44729200-44729400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:44729200-44729600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:44729200-44729600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr10:44729200-44729600	Enhancers	Fetal Intestine Small	intestine
36	chr10:44729200-44729800	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr10:44729200-44730000	Active TSS	H9 Cell Line	embryonic stem cell
38	chr10:44729200-44730400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links