Variant report

Variant	rs471451
Chromosome Location	chr10:44754785-44754786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44668887..44669501-chr10:44754335..44754835,2	MCF-7	breast:
2	chr10:44732066..44733012-chr10:44754258..44755175,3	MCF-7	breast:
3	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:
4	chr10:44753173..44755247-chr10:44795371..44798195,2	MCF-7	breast:
5	chr10:44749530..44752176-chr10:44753699..44756216,2	MCF-7	breast:
6	chr10:44668887..44669565-chr10:44754335..44755174,4	MCF-7	breast:
7	chr10:44753557..44756544-chr10:44758616..44760217,2	MCF-7	breast:
8	chr10:44668858..44670394-chr10:44753194..44755475,2	MCF-7	breast:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11592445	0.81[EUR][1000 genomes]
rs1619661	0.81[EUR][1000 genomes]
rs1657346	0.83[EUR][1000 genomes]
rs1704217	0.81[EUR][1000 genomes]
rs1704218	0.81[EUR][1000 genomes]
rs1746042	0.81[EUR][1000 genomes]
rs1746044	0.80[EUR][1000 genomes]
rs523297	0.84[EUR][1000 genomes]
rs545025	0.82[EUR][1000 genomes]
rs556434	0.81[EUR][1000 genomes]
rs589655	0.81[EUR][1000 genomes]
rs596152	0.81[EUR][1000 genomes]
rs606314	0.81[EUR][1000 genomes]
rs617019	0.82[EUR][1000 genomes]
rs629213	0.82[EUR][1000 genomes]
rs661697	0.82[EUR][1000 genomes]
rs673354	0.81[EUR][1000 genomes]
rs674746	0.81[EUR][1000 genomes]
rs676966	0.82[EUR][1000 genomes]
rs677465	0.81[EUR][1000 genomes]
rs680091	0.82[EUR][1000 genomes]
rs7079375	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44749400-44756200	Weak transcription	Lung	lung
3	chr10:44749600-44756400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:44749800-44756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44750200-44756000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44752800-44755000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:44753000-44757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44753400-44755200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44753600-44754800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:44753600-44755200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:44753600-44755200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:44753600-44755400	Enhancers	Fetal Intestine Small	intestine
13	chr10:44753600-44755600	Enhancers	Fetal Intestine Large	intestine
14	chr10:44753800-44755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:44754000-44754800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:44754000-44755000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:44754200-44754800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:44754200-44756600	Enhancers	GM12878-XiMat	blood
19	chr10:44754400-44754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:44754400-44755200	Enhancers	Liver	Liver
21	chr10:44754400-44755200	Enhancers	Placenta	Placenta
22	chr10:44754600-44755400	Enhancers	Pancreas	Pancrea
23	chr10:44754600-44758400	Weak transcription	H9 Cell Line	embryonic stem cell

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