Variant report

Variant	rs676966
Chromosome Location	chr10:44739594-44739595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44668602..44669269-chr10:44739464..44740027,2	MCF-7	breast:
2	chr10:44668602..44669587-chr10:44739181..44740041,6	MCF-7	breast:
3	chr10:44734818..44736996-chr10:44738257..44741024,2	K562	blood:
4	chr10:44735389..44737534-chr10:44738052..44740916,2	K562	blood:
5	chr10:44668804..44669627-chr10:44739194..44739818,3	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10900000	0.89[EUR][1000 genomes]
rs10900001	0.89[EUR][1000 genomes]
rs10900002	0.89[EUR][1000 genomes]
rs10900003	0.89[EUR][1000 genomes]
rs11238889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs11238890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11238891	0.91[EUR][1000 genomes]
rs11238892	0.91[EUR][1000 genomes]
rs11238894	0.91[EUR][1000 genomes]
rs11238898	0.89[EUR][1000 genomes]
rs11238901	0.89[EUR][1000 genomes]
rs11238902	0.89[EUR][1000 genomes]
rs11238911	0.89[EUR][1000 genomes]
rs11238912	0.89[EUR][1000 genomes]
rs11238915	0.89[EUR][1000 genomes]
rs11238916	0.89[EUR][1000 genomes]
rs11238923	0.92[EUR][1000 genomes]
rs11238925	0.92[EUR][1000 genomes]
rs11238927	0.92[EUR][1000 genomes]
rs11238929	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11238943	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11238944	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11238946	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11238947	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11492882	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11511571	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11511599	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11517223	0.94[EUR][1000 genomes]
rs11517251	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11591406	0.89[EUR][1000 genomes]
rs11592445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11594667	0.89[EUR][1000 genomes]
rs11595159	0.89[EUR][1000 genomes]
rs11595946	0.89[EUR][1000 genomes]
rs12355852	0.92[EUR][1000 genomes]
rs1615053	0.89[EUR][1000 genomes]
rs1619661	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1632484	0.91[ASN][1000 genomes]
rs1657345	1.00[ASN][1000 genomes]
rs1657346	0.89[EUR][1000 genomes]
rs1657349	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1680636	0.89[EUR][1000 genomes]
rs1680639	0.92[EUR][1000 genomes]
rs1704217	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1704218	0.97[EUR][1000 genomes]
rs1704221	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1704222	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1704223	0.89[EUR][1000 genomes]
rs1704226	0.89[EUR][1000 genomes]
rs1704228	0.89[EUR][1000 genomes]
rs17155842	1.00[ASN][1000 genomes]
rs1746042	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1746044	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2146807	1.00[JPT][hapmap]
rs2664856	0.90[EUR][1000 genomes]
rs2760670	0.84[EUR][1000 genomes]
rs2781545	0.93[EUR][1000 genomes]
rs2804031	0.92[EUR][1000 genomes]
rs471451	0.82[EUR][1000 genomes]
rs479596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs494207	0.84[EUR][1000 genomes]
rs523297	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545025	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546659	0.84[EUR][1000 genomes]
rs556434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58129751	0.94[EUR][1000 genomes]
rs583489	0.85[EUR][1000 genomes]
rs58540467	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs589655	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596152	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs605414	0.84[EUR][1000 genomes]
rs606314	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617019	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617035	0.81[EUR][1000 genomes]
rs617542	0.84[EUR][1000 genomes]
rs61855739	0.89[EUR][1000 genomes]
rs61855740	0.89[EUR][1000 genomes]
rs61855743	0.89[EUR][1000 genomes]
rs61857460	0.89[EUR][1000 genomes]
rs622725	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629213	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634963	0.85[CEU][hapmap]
rs646890	0.84[EUR][1000 genomes]
rs649192	0.84[EUR][1000 genomes]
rs661697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673354	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs673778	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs674746	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs677465	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs680091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079375	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7082177	0.89[EUR][1000 genomes]
rs7086639	0.89[EUR][1000 genomes]
rs7097076	0.92[EUR][1000 genomes]
rs7100370	0.89[EUR][1000 genomes]
rs73286667	1.00[ASN][1000 genomes]
rs7900072	0.89[EUR][1000 genomes]
rs7902040	0.89[EUR][1000 genomes]
rs800314	0.83[ASN][1000 genomes]
rs906944	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:44738000-44745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44738400-44740200	Weak transcription	Pancreas	Pancrea
4	chr10:44739200-44741400	Enhancers	HepG2	liver
5	chr10:44739400-44740000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:44739400-44740400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:44739400-44740400	Enhancers	HUES6 Cell Line	embryonic stem cell

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