Variant report

Variant	rs906944
Chromosome Location	chr10:44705439-44705440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10900000	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10900001	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10900002	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10900003	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238889	0.91[EUR][1000 genomes]
rs11238890	0.91[EUR][1000 genomes]
rs11238891	0.91[EUR][1000 genomes]
rs11238892	0.91[EUR][1000 genomes]
rs11238894	0.91[EUR][1000 genomes]
rs11238898	0.92[EUR][1000 genomes]
rs11238901	0.92[EUR][1000 genomes]
rs11238902	0.92[EUR][1000 genomes]
rs11238911	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238912	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238915	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238916	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238923	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238925	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238927	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238929	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238943	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238944	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238946	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238947	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11492882	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11511571	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11511599	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11517223	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11517251	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11591406	0.92[EUR][1000 genomes]
rs11592445	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11594667	0.92[EUR][1000 genomes]
rs11595159	0.92[EUR][1000 genomes]
rs11595946	0.92[EUR][1000 genomes]
rs12355852	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615053	0.92[EUR][1000 genomes]
rs1619661	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1657346	0.80[EUR][1000 genomes]
rs1657349	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1680636	0.92[EUR][1000 genomes]
rs1680639	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704217	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704218	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1704223	0.92[EUR][1000 genomes]
rs1704226	0.92[EUR][1000 genomes]
rs1704228	0.92[EUR][1000 genomes]
rs1746042	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1746044	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2664856	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2781545	0.89[EUR][1000 genomes]
rs2804031	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs523297	0.85[EUR][1000 genomes]
rs545025	0.91[EUR][1000 genomes]
rs556434	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58129751	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58540467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs589655	0.89[EUR][1000 genomes]
rs596152	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs606314	0.89[EUR][1000 genomes]
rs617019	0.91[EUR][1000 genomes]
rs61855739	0.92[EUR][1000 genomes]
rs61855740	0.92[EUR][1000 genomes]
rs61855743	0.92[EUR][1000 genomes]
rs61857460	0.92[EUR][1000 genomes]
rs629213	0.91[EUR][1000 genomes]
rs661697	0.91[EUR][1000 genomes]
rs673354	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs673778	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs674746	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs676966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs677465	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs680091	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7079375	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7082177	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7086639	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7097076	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100370	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7900072	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7902040	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44703000-44705800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44703400-44705600	Enhancers	HepG2	liver
3	chr10:44704400-44705600	Enhancers	Ovary	ovary
4	chr10:44704400-44705800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:44704600-44705600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44704600-44705800	Enhancers	Fetal Heart	heart
7	chr10:44704600-44706000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44705000-44705800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:44705200-44705600	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44705200-44705600	Enhancers	Right Atrium	heart
11	chr10:44705200-44705600	Enhancers	Right Ventricle	heart
12	chr10:44705200-44705800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:44705400-44705600	Enhancers	Left Ventricle	heart
14	chr10:44705400-44705800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:44705400-44706200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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