Variant report

Variant	rs800315
Chromosome Location	chr10:44786833-44786834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1657344	1.00[ASN][1000 genomes]
rs1657346	0.91[ASN][1000 genomes]
rs17155988	1.00[ASN][1000 genomes]
rs73288735	0.83[ASN][1000 genomes]
rs73288739	0.83[ASN][1000 genomes]
rs800314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs800329	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
4	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
5	chr10:44780400-44787600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:44782000-44787800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:44783200-44787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:44783600-44787800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:44783800-44787400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:44783800-44787800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:44784800-44787600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
15	chr10:44785000-44787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:44785600-44788600	Weak transcription	Osteobl	bone
18	chr10:44786400-44787800	Enhancers	Fetal Stomach	stomach
19	chr10:44786600-44787000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:44786600-44788200	Enhancers	Fetal Kidney	kidney
21	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:44786800-44787000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:44786800-44787800	Weak transcription	Ovary	ovary

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